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egs/wsj/s5/steps/nnet2/retrain_simple2.sh
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#!/bin/bash # Copyright 2012-2014 Johns Hopkins University (Author: Daniel Povey). # 2013 Xiaohui Zhang # 2013 Guoguo Chen # 2014 Vimal Manohar # Apache 2.0. # retrain_simple2.sh is a script for training a single-layer (softmax-only) # neural network on top of activations dumped from an existing network; we'll # later combine the networks to a single network. # It differs from train_pnorm_simple2.sh in the same way that retrain_fast.sh # differs from train_pnorm_fast.sh. # Begin configuration section. cmd=run.pl num_epochs=5 # Number of epochs of training; initial_learning_rate=0.04 final_learning_rate=0.004 minibatch_size=128 # by default use a smallish minibatch size for neural net # training; this controls instability which would otherwise # be a problem with multi-threaded update. samples_per_iter=400000 # each iteration of training, see this many samples # per job. This option is passed to get_egs.sh num_jobs_nnet=4 # Number of neural net jobs to run in parallel. This option # is passed to get_egs.sh. prior_subset_size=10000 # 10k samples per job, for computing priors. Should be # more than enough. num_jobs_compute_prior=10 # these are single-threaded, run on CPU. get_egs_stage=0 max_models_combine=20 # The "max_models_combine" is the maximum number of models we give # to the final 'combine' stage, but these models will themselves be averages of # iteration-number ranges. shuffle_buffer_size=5000 # This "buffer_size" variable controls randomization of the samples # on each iter. You could set it to 0 or to a large value for complete # randomization, but this would both consume memory and cause spikes in # disk I/O. Smaller is easier on disk and memory but less random. It's # not a huge deal though, as samples are anyway randomized right at the start. # (the point of this is to get data in different minibatches on different iterations, # since in the preconditioning method, 2 samples in the same minibatch can # affect each others' gradients. stage=-4 alpha=4.0 # relates to online preconditioning. update_period=4 # relates to online preconditioning: says how often we update the subspace. num_samples_history=2000 # relates to online preconditioning precondition_rank_in=20 # relates to online preconditioning precondition_rank_out=80 # relates to online preconditioning max_change_per_sample=0.075 mix_up=0 # Number of components to mix up to (should be > #tree leaves, if # specified.) num_threads=16 parallel_opts="--num-threads 16 --mem 1G" # by default we use 16 threads; this lets the queue know. # note: parallel_opts doesn't automatically get adjusted if you adjust num-threads. combine_num_threads=8 combine_parallel_opts="--num-threads 8" # queue options for the "combine" stage. cleanup=true egs_dir= egs_opts= io_opts="--max-jobs-run 5" # for jobs with a lot of I/O, limits the number running at one time. align_cmd= # The cmd that is passed to steps/nnet2/align.sh align_use_gpu= # Passed to use_gpu in steps/nnet2/align.sh [yes/no] realign_epochs= # List of epochs, the beginning of which realignment is done num_jobs_align=30 # Number of jobs for realignment # End configuration section. echo "$0 $@" # Print the command line for logging if [ -f path.sh ]; then . ./path.sh; fi . parse_options.sh || exit 1; if [ $# != 4 ]; then echo "Usage: $0 [opts] <data> <lang> <ali-dir> <exp-dir>" echo " e.g.: $0 data/train data/lang exp/tri3_ali exp/tri4_nnet" echo "" echo "Main options (for others, see top of script file)" echo " --config <config-file> # config file containing options" echo " --cmd (utils/run.pl|utils/queue.pl <queue opts>) # how to run jobs." echo " --num-epochs <#epochs|5> # Number of epochs of training" echo " --initial-learning-rate <initial-learning-rate|0.02> # Learning rate at start of training, e.g. 0.02 for small" echo " # data, 0.01 for large data" echo " --final-learning-rate <final-learning-rate|0.004> # Learning rate at end of training, e.g. 0.004 for small" echo " # data, 0.001 for large data" echo " --mix-up <#pseudo-gaussians|0> # Can be used to have multiple targets in final output layer," echo " # per context-dependent state. Try a number several times #states." echo " --num-jobs-nnet <num-jobs|8> # Number of parallel jobs to use for main neural net" echo " # training (will affect results as well as speed; try 8, 16)" echo " # Note: if you increase this, you may want to also increase" echo " # the learning rate." echo " --num-threads <num-threads|16> # Number of parallel threads per job (will affect results" echo " # as well as speed; may interact with batch size; if you increase" echo " # this, you may want to decrease the batch size." echo " --parallel-opts <opts|\"--num-threads 16 --mem 1G\"> # extra options to pass to e.g. queue.pl for processes that" echo " # use multiple threads... " echo " --io-opts <opts|\"--max-jobs-run 10\"> # Options given to e.g. queue.pl for jobs that do a lot of I/O." echo " --minibatch-size <minibatch-size|128> # Size of minibatch to process (note: product with --num-threads" echo " # should not get too large, e.g. >2k)." echo " --samples-per-iter <#samples|400000> # Number of samples of data to process per iteration, per" echo " # process." echo " --realign-epochs <list-of-epochs|\"\"> # A list of space-separated epoch indices the beginning of which" echo " # realignment is to be done" echo " --align-cmd (utils/run.pl|utils/queue.pl <queue opts>) # passed to align.sh" echo " --align-use-gpu (yes/no) # specify is gpu is to be used for realignment" echo " --num-jobs-align <#njobs|30> # Number of jobs to perform realignment" echo " --stage <stage|-4> # Used to run a partially-completed training process from somewhere in" echo " # the middle." exit 1; fi data=$1 lang=$2 alidir=$3 dir=$4 if [ ! -z "$realign_epochs" ]; then [ -z "$align_cmd" ] && echo "$0: realign_epochs specified but align_cmd not specified" && exit 1 [ -z "$align_use_gpu" ] && echo "$0: realign_epochs specified but align_use_gpu not specified" && exit 1 fi # Check some files. for f in $data/feats.scp $lang/L.fst $alidir/ali.1.gz $alidir/final.mdl $alidir/tree; do [ ! -f $f ] && echo "$0: no such file $f" && exit 1; done # Set some variables. num_leaves=`tree-info $alidir/tree 2>/dev/null | grep num-pdfs | awk '{print $2}'` || exit 1 [ -z $num_leaves ] && echo "\$num_leaves is unset" && exit 1 [ "$num_leaves" -eq "0" ] && echo "\$num_leaves is 0" && exit 1 nj=`cat $alidir/num_jobs` || exit 1; # number of jobs in alignment dir... # in this dir we'll have just one job. sdata=$data/split$nj utils/split_data.sh $data $nj mkdir -p $dir/log echo $nj > $dir/num_jobs cp $alidir/tree $dir utils/lang/check_phones_compatible.sh $lang/phones.txt $alidir/phones.txt || exit 1; cp $lang/phones.txt $dir || exit 1; if [ $stage -le -3 ] && [ -z "$egs_dir" ]; then echo "$0: calling get_egs2.sh" # set --frames-per-eg to 1 because there is no context, so there # is no advantage in having multiple frames per eg. steps/nnet2/get_egs2.sh --feat-type raw \ --frames-per-eg 1 --left-context 0 --right-context 0 \ --cmvn-opts "--norm-means=false --norm-vars=false" \ --io-opts "$io_opts" \ --samples-per-iter $samples_per_iter --stage $get_egs_stage \ --cmd "$cmd" $egs_opts $data $alidir $dir/egs || exit 1; fi if [ -z $egs_dir ]; then egs_dir=$dir/egs fi frames_per_eg=$(cat $egs_dir/info/frames_per_eg) || { echo "error: no such file $egs_dir/info/frames_per_eg"; exit 1; } num_archives=$(cat $egs_dir/info/num_archives) || { echo "error: no such file $egs_dir/info/frames_per_eg"; exit 1; } # num_archives_expanded considers each separate label-position from # 0..frames_per_eg-1 to be a separate archive. num_archives_expanded=$[$num_archives*$frames_per_eg] if [ $num_jobs_nnet -gt $num_archives_expanded ]; then echo "$0: --num-jobs-nnet cannot exceed num-archives*frames-per-eg which is $num_archives_expanded" echo "$0: setting --num-jobs-nnet to $num_archives_expanded" num_jobs_nnet=$num_archives_expanded fi if [ $stage -le -2 ]; then echo "$0: initializing neural net"; feat_dim=$(feat-to-dim scp:$data/feats.scp -) || exit 1; online_preconditioning_opts="alpha=$alpha num-samples-history=$num_samples_history update-period=$update_period rank-in=$precondition_rank_in rank-out=$precondition_rank_out max-change-per-sample=$max_change_per_sample" stddev=`perl -e "print 1.0/sqrt($pnorm_input_dim);"` cat >$dir/nnet.config <<EOF AffineComponentPreconditionedOnline input-dim=$feat_dim output-dim=$num_leaves $online_preconditioning_opts learning-rate=$initial_learning_rate param-stddev=0 bias-stddev=0 SoftmaxComponent dim=$num_leaves EOF $cmd $dir/log/nnet_init.log \ nnet-am-init $alidir/tree $lang/topo "nnet-init $dir/nnet.config -|" \ $dir/0.mdl || exit 1; fi if [ $stage -le -1 ]; then echo "Training transition probabilities and setting priors" $cmd $dir/log/train_trans.log \ nnet-train-transitions $dir/0.mdl "ark:gunzip -c $alidir/ali.*.gz|" $dir/0.mdl \ || exit 1; fi # set num_iters so that as close as possible, we process the data $num_epochs # times, i.e. $num_iters*$num_jobs_nnet == $num_epochs*$num_archives_expanded num_iters=$[($num_epochs*$num_archives_expanded)/$num_jobs_nnet] echo "$0: Will train for $num_epochs epochs = $num_iters iterations" mix_up_iter=$[$num_iters/2] if [ $num_threads -eq 1 ]; then parallel_suffix="-simple" # this enables us to use GPU code if # we have just one thread. parallel_train_opts= if ! cuda-compiled; then echo "$0: WARNING: you are running with one thread but you have not compiled" echo " for CUDA. You may be running a setup optimized for GPUs. If you have" echo " GPUs and have nvcc installed, go to src/ and do ./configure; make" fi else parallel_suffix="-parallel" parallel_train_opts="--num-threads=$num_threads" fi approx_iters_per_epoch=$[$num_iters/$num_epochs] # First work out how many models we want to combine over in the final # nnet-combine-fast invocation. This equals # min(max(max_models_combine, iters_per_epoch), # 2/3 * iters_after_mixup) num_models_combine=$max_models_combine if [ $num_models_combine -lt $approx_iters_per_epoch ]; then num_models_combine=$approx_iters_per_epoch fi iters_after_mixup_23=$[(($num_iters-$mix_up_iter-1)*2)/3] if [ $num_models_combine -gt $iters_after_mixup_23 ]; then num_models_combine=$iters_after_mixup_23 fi first_model_combine=$[$num_iters-$num_models_combine+1] x=0 for realign_epoch in $realign_epochs; do # compare the equation below with the equation we use to set num_iters above. # note, realign_epochs may be floating-point, which is why we don't use $[] to # do the math. realign_iter=$(perl -e 'print int(($ARGV[0]*$ARGV[1])/$ARGV[2]);' $realign_epoch $num_archives_expanded $num_jobs_nnet) realign_this_iter[$realign_iter]=$realign_epoch done cur_egs_dir=$egs_dir while [ $x -lt $num_iters ]; do if [ ! -z "${realign_this_iter[$x]}" ]; then prev_egs_dir=$cur_egs_dir cur_egs_dir=$dir/egs_${realign_this_iter[$x]} fi if [ $x -ge 0 ] && [ $stage -le $x ]; then if [ ! -z "${realign_this_iter[$x]}" ]; then epoch=${realign_this_iter[$x]} echo "Getting average posterior for purposes of adjusting the priors." # Note: this just uses CPUs, using a smallish subset of data. # always use the first egs archive, which makes the script simpler; # we're using different random subsets of it. rm $dir/post.$x.*.vec 2>/dev/null $cmd JOB=1:$num_jobs_compute_prior $dir/log/get_post.$x.JOB.log \ nnet-copy-egs --srand=JOB --frame=random ark:$prev_egs_dir/egs.1.ark ark:- \| \ nnet-subset-egs --srand=JOB --n=$prior_subset_size ark:- ark:- \| \ nnet-compute-from-egs "nnet-to-raw-nnet $dir/$x.mdl -|" ark:- ark:- \| \ matrix-sum-rows ark:- ark:- \| vector-sum ark:- $dir/post.$x.JOB.vec || exit 1; sleep 3; # make sure there is time for $dir/post.$x.*.vec to appear. $cmd $dir/log/vector_sum.$x.log \ vector-sum $dir/post.$x.*.vec $dir/post.$x.vec || exit 1; rm $dir/post.$x.*.vec; echo "Re-adjusting priors based on computed posteriors" $cmd $dir/log/adjust_priors.$x.log \ nnet-adjust-priors $dir/$x.mdl $dir/post.$x.vec $dir/$x.mdl || exit 1; sleep 2 steps/nnet2/align.sh --nj $num_jobs_align --cmd "$align_cmd" --use-gpu $align_use_gpu \ --transform-dir "$transform_dir" --online-ivector-dir "$online_ivector_dir" \ --iter $x $data $lang $dir $dir/ali_$epoch || exit 1 steps/nnet2/relabel_egs2.sh --cmd "$cmd" --iter $x $dir/ali_$epoch \ $prev_egs_dir $cur_egs_dir || exit 1 if $cleanup && [[ $prev_egs_dir =~ $dir/egs* ]]; then steps/nnet2/remove_egs.sh $prev_egs_dir fi fi # Set off jobs doing some diagnostics, in the background. # Use the egs dir from the previous iteration for the diagnostics $cmd $dir/log/compute_prob_valid.$x.log \ nnet-compute-prob $dir/$x.mdl ark:$cur_egs_dir/valid_diagnostic.egs & $cmd $dir/log/compute_prob_train.$x.log \ nnet-compute-prob $dir/$x.mdl ark:$cur_egs_dir/train_diagnostic.egs & if [ $x -gt 0 ] && [ ! -f $dir/log/mix_up.$[$x-1].log ]; then $cmd $dir/log/progress.$x.log \ nnet-show-progress --use-gpu=no $dir/$[$x-1].mdl $dir/$x.mdl \ ark:$cur_egs_dir/train_diagnostic.egs '&&' \ nnet-am-info $dir/$x.mdl & fi echo "Training neural net (pass $x)" mdl=$dir/$x.mdl if [ $x -eq 0 ]; then # on iteration zero, use a smaller minibatch # size and just one job: the model-averaging doesn't seem to be helpful # when the model is changing too fast (i.e. it worsens the objective # function), and the smaller minibatch size will help to keep # the update stable. this_minibatch_size=$[$minibatch_size/2]; do_average=false else this_minibatch_size=$minibatch_size do_average=true fi rm $dir/.error 2>/dev/null ( # this sub-shell is so that when we "wait" below, # we only wait for the training jobs that we just spawned, # not the diagnostic jobs that we spawned above. # We can't easily use a single parallel SGE job to do the main training, # because the computation of which archive and which --frame option # to use for each job is a little complex, so we spawn each one separately. for n in $(seq $num_jobs_nnet); do k=$[$x*$num_jobs_nnet + $n - 1]; # k is a zero-based index that we'll derive # the other indexes from. archive=$[($k%$num_archives)+1]; # work out the 1-based archive index. frame=$[(($k/$num_archives)%$frames_per_eg)]; # work out the 0-based frame # index; this increases more slowly than the archive index because the # same archive with different frame indexes will give similar gradients, # so we want to separate them in time. $cmd $parallel_opts $dir/log/train.$x.$n.log \ nnet-train$parallel_suffix $parallel_train_opts \ --minibatch-size=$this_minibatch_size --srand=$x $dir/$x.mdl \ "ark,bg:nnet-copy-egs --frame=$frame ark:$cur_egs_dir/egs.$archive.ark ark:-|nnet-shuffle-egs --buffer-size=$shuffle_buffer_size --srand=$x ark:- ark:-|" \ $dir/$[$x+1].$n.mdl || touch $dir/.error & done wait ) # the error message below is not that informative, but $cmd will # have printed a more specific one. [ -f $dir/.error ] && echo "$0: error on iteration $x of training" && exit 1; nnets_list= for n in `seq 1 $num_jobs_nnet`; do nnets_list="$nnets_list $dir/$[$x+1].$n.mdl" done learning_rate=`perl -e '($x,$n,$i,$f)=@ARGV; print ($x >= $n ? $f : $i*exp($x*log($f/$i)/$n));' $[$x+1] $num_iters $initial_learning_rate $final_learning_rate`; if $do_average; then # average the output of the different jobs. $cmd $dir/log/average.$x.log \ nnet-am-average $nnets_list - \| \ nnet-am-copy --learning-rate=$learning_rate - $dir/$[$x+1].mdl || exit 1; else # choose the best from the different jobs. n=$(perl -e '($nj,$pat)=@ARGV; $best_n=1; $best_logprob=-1.0e+10; for ($n=1;$n<=$nj;$n++) { $fn = sprintf($pat,$n); open(F, "<$fn") || die "Error opening log file $fn"; undef $logprob; while (<F>) { if (m/log-prob-per-frame=(\S+)/) { $logprob=$1; } } close(F); if (defined $logprob && $logprob > $best_logprob) { $best_logprob=$logprob; $best_n=$n; } } print "$best_n "; ' $num_jobs_nnet $dir/log/train.$x.%d.log) || exit 1; [ -z "$n" ] && echo "Error getting best model" && exit 1; $cmd $dir/log/select.$x.log \ nnet-am-copy --learning-rate=$learning_rate $dir/$[$x+1].$n.mdl $dir/$[$x+1].mdl || exit 1; fi if [ "$mix_up" -gt 0 ] && [ $x -eq $mix_up_iter ]; then # mix up. echo Mixing up from $num_leaves to $mix_up components $cmd $dir/log/mix_up.$x.log \ nnet-am-mixup --min-count=10 --num-mixtures=$mix_up \ $dir/$[$x+1].mdl $dir/$[$x+1].mdl || exit 1; fi rm $nnets_list [ ! -f $dir/$[$x+1].mdl ] && exit 1; if [ -f $dir/$[$x-1].mdl ] && $cleanup && \ [ $[($x-1)%100] -ne 0 ] && [ $[$x-1] -lt $first_model_combine ]; then rm $dir/$[$x-1].mdl fi fi x=$[$x+1] done if [ $stage -le $num_iters ]; then echo "Doing final combination to produce final.mdl" # Now do combination. nnets_list=() # the if..else..fi statement below sets 'nnets_list'. if [ $max_models_combine -lt $num_models_combine ]; then # The number of models to combine is too large, e.g. > 20. In this case, # each argument to nnet-combine-fast will be an average of multiple models. cur_offset=0 # current offset from first_model_combine. for n in $(seq $max_models_combine); do next_offset=$[($n*$num_models_combine)/$max_models_combine] sub_list="" for o in $(seq $cur_offset $[$next_offset-1]); do iter=$[$first_model_combine+$o] mdl=$dir/$iter.mdl [ ! -f $mdl ] && echo "Expected $mdl to exist" && exit 1; sub_list="$sub_list $mdl" done nnets_list[$[$n-1]]="nnet-am-average $sub_list - |" cur_offset=$next_offset done else nnets_list= for n in $(seq 0 $[num_models_combine-1]); do iter=$[$first_model_combine+$n] mdl=$dir/$iter.mdl [ ! -f $mdl ] && echo "Expected $mdl to exist" && exit 1; nnets_list[$n]=$mdl done fi # Below, use --use-gpu=no to disable nnet-combine-fast from using a GPU, as # if there are many models it can give out-of-memory error; set num-threads to 8 # to speed it up (this isn't ideal...) num_egs=`nnet-copy-egs ark:$cur_egs_dir/combine.egs ark:/dev/null 2>&1 | tail -n 1 | awk '{print $NF}'` mb=$[($num_egs+$combine_num_threads-1)/$combine_num_threads] [ $mb -gt 512 ] && mb=512 # Setting --initial-model to a large value makes it initialize the combination # with the average of all the models. It's important not to start with a # single model, or, due to the invariance to scaling that these nonlinearities # give us, we get zero diagonal entries in the fisher matrix that # nnet-combine-fast uses for scaling, which after flooring and inversion, has # the effect that the initial model chosen gets much higher learning rates # than the others. This prevents the optimization from working well. $cmd $combine_parallel_opts $dir/log/combine.log \ nnet-combine-fast --initial-model=100000 --num-lbfgs-iters=40 --use-gpu=no \ --num-threads=$combine_num_threads \ --verbose=3 --minibatch-size=$mb "${nnets_list[@]}" ark:$cur_egs_dir/combine.egs \ $dir/final.mdl || exit 1; # Compute the probability of the final, combined model with # the same subset we used for the previous compute_probs, as the # different subsets will lead to different probs. $cmd $dir/log/compute_prob_valid.final.log \ nnet-compute-prob $dir/final.mdl ark:$cur_egs_dir/valid_diagnostic.egs & $cmd $dir/log/compute_prob_train.final.log \ nnet-compute-prob $dir/final.mdl ark:$cur_egs_dir/train_diagnostic.egs & fi if [ $stage -le $[$num_iters+1] ]; then echo "Getting average posterior for purposes of adjusting the priors." # Note: this just uses CPUs, using a smallish subset of data. rm $dir/post.$x.*.vec 2>/dev/null $cmd JOB=1:$num_jobs_compute_prior $dir/log/get_post.$x.JOB.log \ nnet-copy-egs --frame=random --srand=JOB ark:$cur_egs_dir/egs.1.ark ark:- \| \ nnet-subset-egs --srand=JOB --n=$prior_subset_size ark:- ark:- \| \ nnet-compute-from-egs "nnet-to-raw-nnet $dir/final.mdl -|" ark:- ark:- \| \ matrix-sum-rows ark:- ark:- \| vector-sum ark:- $dir/post.$x.JOB.vec || exit 1; sleep 3; # make sure there is time for $dir/post.$x.*.vec to appear. $cmd $dir/log/vector_sum.$x.log \ vector-sum $dir/post.$x.*.vec $dir/post.$x.vec || exit 1; rm $dir/post.$x.*.vec; echo "Re-adjusting priors based on computed posteriors" $cmd $dir/log/adjust_priors.final.log \ nnet-adjust-priors $dir/final.mdl $dir/post.$x.vec $dir/final.mdl || exit 1; fi if [ ! -f $dir/final.mdl ]; then echo "$0: $dir/final.mdl does not exist." # we don't want to clean up if the training didn't succeed. exit 1; fi sleep 2 echo Done if $cleanup; then echo Cleaning up data if [[ $cur_egs_dir =~ $dir/egs* ]]; then steps/nnet2/remove_egs.sh $cur_egs_dir fi echo Removing most of the models for x in `seq 0 $num_iters`; do if [ $[$x%100] -ne 0 ] && [ $x -ne $num_iters ] && [ -f $dir/$x.mdl ]; then # delete all but every 100th model; don't delete the ones which combine to form the final model. rm $dir/$x.mdl fi done fi |