Blame view
egs/wsj/s5/steps/nnet3/dot/nnet3_to_dot.py
19.3 KB
8dcb6dfcb
first commit
|
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 |
#!/usr/bin/env python
# Copyright 2015 Johns Hopkins University (Author: Vijayaditya Peddinti)
# Apache 2.0
# script to convert nnet3-am-info output to a dot graph
# we're using python 3.x style print but want it to work in python 2.x,
from __future__ import print_function
import re
import os
import argparse
import sys
import math
import warnings
import descriptor_parser
import pprint
node_attributes = {
'input-node':{
'shape':'oval'
},
'output-node':{
'shape':'oval'
},
'NaturalGradientAffineComponent':{
'color':'lightgrey',
'shape':'box',
'style':'filled'
},
'NaturalGradientPerElementScaleComponent':{
'color':'lightpink',
'shape':'box',
'style':'filled'
},
'ConvolutionComponent':{
'color':'lightpink',
'shape':'box',
'style':'filled'
},
'FixedScaleComponent':{
'color':'blueviolet',
'shape':'box',
'style':'filled'
},
'FixedAffineComponent':{
'color':'darkolivegreen1',
'shape':'box',
'style':'filled'
},
'SigmoidComponent':{
'color':'bisque',
'shape':'rectangle',
'style':'filled'
},
'TanhComponent':{
'color':'bisque',
'shape':'rectangle',
'style':'filled'
},
'NormalizeComponent':{
'color':'aquamarine',
'shape':'rectangle',
'style':'filled'
},
'RectifiedLinearComponent':{
'color':'bisque',
'shape':'rectangle',
'style':'filled'
},
'ClipGradientComponent':{
'color':'bisque',
'shape':'rectangle',
'style':'filled'
},
'ElementwiseProductComponent':{
'color':'green',
'shape':'rectangle',
'style':'filled'
},
'LogSoftmaxComponent':{
'color':'cyan',
'shape':'rectangle',
'style':'filled'
}
}
def GetDotNodeName(name_string, is_component = False):
# this function is required as dot does not allow all the component names
# allowed by nnet3.
# Identified incompatibilities :
# 1. dot does not allow hyphen(-) and dot(.) in names
# 2. Nnet3 names can be shared among components and component nodes
# dot does not allow common names
#
node_name_string = re.sub("-", "hyphen", name_string)
node_name_string = re.sub("\.", "_dot_", node_name_string)
if is_component:
node_name_string += node_name_string.strip() + "_component"
return {"label":name_string, "node":node_name_string}
def ProcessAppendDescriptor(segment, parent_node_name, affix, edge_attributes = None):
dot_graph = []
names = []
desc_name = 'Append_{0}'.format(affix)
for i in range(len(segment['sub_segments'])):
sub_segment = segment['sub_segments'][i]
part_name = "{0}{1}{2}".format(desc_name, sub_segment['name'], i)
names.append("<{0}> part {1}".format(GetDotNodeName(part_name)['node'], i))
dot_graph += DescriptorSegmentToDot(sub_segment, "{0}:{1}".format(desc_name, part_name), desc_name)
part_index = len(segment['sub_segments'])
for i in range(len(segment['arguments'])):
part_name = "{0}{1}{2}".format(desc_name, segment['arguments'][i], part_index + i)
names.append("<{0}> part {1}".format(GetDotNodeName(part_name)['node'], part_index + i))
dot_graph.append("{0} -> {1}:{2}".format(GetDotNodeName(segment['arguments'][i])['node'], GetDotNodeName(desc_name)['node'], GetDotNodeName(part_name)['node']))
label = "|".join(names)
label = "{{"+label+"}|Append}"
dot_graph.append('{0} [shape=Mrecord, label="{1}"];'.format(GetDotNodeName(desc_name)['node'], label))
attr_string = ''
if edge_attributes is not None:
if 'label' in edge_attributes:
attr_string += " label={0} ".format(edge_attributes['label'])
if 'style' in edge_attributes:
attr_string += ' style={0} '.format(edge_attributes['style'])
dot_string = '{0} -> {1} [tailport=s]'.format(GetDotNodeName(desc_name)['node'], GetDotNodeName(parent_node_name)['node'])
if attr_string != '':
dot_string += ' [{0}] '.format(attr_string)
dot_graph.append(dot_string)
return dot_graph
def ProcessRoundDescriptor(segment, parent_node_name, affix, edge_attributes = None):
dot_graph = []
label = 'Round ({0})'.format(segment['arguments'][1])
style = None
if edge_attributes is not None:
if 'label' in edge_attributes:
label = "{0} {1}".format(edge_attributes['label'], label)
if 'style' in edge_attributes:
style = 'style={0}'.format(edge_attributes['style'])
attr_string = 'label="{0}"'.format(label)
if style is not None:
attr_string += ' {0}'.format(style)
dot_graph.append('{0}->{1} [ {2} ]'.format(GetDotNodeName(segment['arguments'][0])['node'],
GetDotNodeName(parent_node_name)['node'],
attr_string))
if segment['sub_segments']:
raise Exception("Round can just deal with forwarding descriptor, no sub-segments allowed")
return dot_graph
def ProcessOffsetDescriptor(segment, parent_node_name, affix, edge_attributes = None):
dot_graph = []
label = 'Offset ({0})'.format(segment['arguments'][1])
style = None
if edge_attributes is not None:
if 'label' in edge_attributes:
label = "{0} {1}".format(edge_attributes['label'], label)
if 'style' in edge_attributes:
style = 'style={0}'.format(edge_attributes['style'])
attr_string = 'label="{0}"'.format(label)
if style is not None:
attr_string += ' {0}'.format(style)
dot_graph.append('{0}->{1} [ {2} ]'.format(GetDotNodeName(segment['arguments'][0])['node'],
GetDotNodeName(parent_node_name)['node'],
attr_string))
if segment['sub_segments']:
raise Exception("Offset can just deal with forwarding descriptor, no sub-segments allowed")
return dot_graph
def ProcessSumDescriptor(segment, parent_node_name, affix, edge_attributes = None):
dot_graph = []
names = []
desc_name = 'Sum_{0}'.format(affix)
# create the sum node
for i in range(len(segment['sub_segments'])):
sub_segment = segment['sub_segments'][i]
part_name = "{0}{1}{2}".format(desc_name, sub_segment['name'], i)
names.append("<{0}> part {1}".format(GetDotNodeName(part_name)['node'], i))
dot_graph += DescriptorSegmentToDot(sub_segment, "{0}:{1}".format(desc_name, part_name), "{0}_{1}".format(desc_name, i))
# link the sum node parts to corresponding segments
part_index = len(segment['sub_segments'])
for i in range(len(segment['arguments'])):
part_name = "{0}{1}{2}".format(desc_name, segment['arguments'][i], part_index + i)
names.append("<{0}> part {1}".format(GetDotNodeName(part_name)['node'], part_index + i))
dot_graph.append("{0} -> {1}:{2}".format(GetDotNodeName(segment['arguments'][i])['node'], GetDotNodeName(desc_name)['node'], GetDotNodeName(part_name)['node']))
label = "|".join(names)
label = '{{'+label+'}|Sum}'
dot_graph.append('{0} [shape=Mrecord, label="{1}", color=red];'.format(GetDotNodeName(desc_name)['node'], label))
attr_string = ''
if edge_attributes is not None:
if 'label' in edge_attributes:
attr_string += " label={0} ".format(edge_attributes['label'])
if 'style' in edge_attributes:
attr_string += ' style={0} '.format(edge_attributes['style'])
dot_string = '{0} -> {1}'.format(GetDotNodeName(desc_name)['node'], GetDotNodeName(parent_node_name)['node'])
dot_string += ' [{0} tailport=s ] '.format(attr_string)
dot_graph.append(dot_string)
return dot_graph
def ProcessReplaceIndexDescriptor(segment, parent_node_name, affix, edge_attributes = None):
dot_graph = []
label = 'ReplaceIndex({0}, {1})'.format(segment['arguments'][1], segment['arguments'][2])
style = None
if edge_attributes is not None:
if 'label' in edge_attributes:
label = "{0} {1}".format(edge_attributes['label'], label)
if 'style' in edge_attributes:
style = 'style={0}'.format(edge_attributes['style'])
attr_string = 'label="{0}"'.format(label)
if style is not None:
attr_string += ' {0}'.format(style)
dot_graph.append('{0}->{1} [{2}]'.format(GetDotNodeName(segment['arguments'][0])['node'],
GetDotNodeName(parent_node_name)['node'],
attr_string))
if segment['sub_segments']:
raise Exception("ReplaceIndex can just deal with forwarding descriptor, no sub-segments allowed")
return dot_graph
def ProcessIfDefinedDescriptor(segment, parent_node_name, affix, edge_attributes = None):
# IfDefined adds attributes to the edges
if edge_attributes is not None:
raise Exception("edge_attributes was not None, this means an IfDefined descriptor was calling the current IfDefined descriptor. This is not allowed")
dot_graph = []
dot_graph.append('#ProcessIfDefinedDescriptor')
names = []
if segment['sub_segments']:
sub_segment = segment['sub_segments'][0]
dot_graph += DescriptorSegmentToDot(sub_segment, parent_node_name, parent_node_name, edge_attributes={'style':'dotted', 'label':'IfDefined'})
if segment['arguments']:
dot_graph.append('{0} -> {1} [style=dotted, label="IfDefined"]'.format(GetDotNodeName(segment['arguments'][0])['node'], GetDotNodeName(parent_node_name)['node']))
return dot_graph
def DescriptorSegmentToDot(segment, parent_node_name, affix, edge_attributes = None):
# segment is a dicionary which corresponds to a descriptor
dot_graph = []
if segment['name'] == "Append":
dot_graph += ProcessAppendDescriptor(segment, parent_node_name, affix, edge_attributes)
elif segment['name'] == "Offset":
dot_graph += ProcessOffsetDescriptor(segment, parent_node_name, affix, edge_attributes)
elif segment['name'] == "Sum":
dot_graph += ProcessSumDescriptor(segment, parent_node_name, affix, edge_attributes)
elif segment['name'] == "IfDefined":
dot_graph += ProcessIfDefinedDescriptor(segment, parent_node_name, affix, edge_attributes)
elif segment['name'] == "ReplaceIndex":
dot_graph += ProcessReplaceIndexDescriptor(segment, parent_node_name, affix, edge_attributes)
elif segment['name'] == "Round":
dot_graph += ProcessRoundDescriptor(segment, parent_node_name, affix, edge_attributes)
else:
raise Exception('Descriptor {0}, is not recognized by this script. Please add Process{0}Descriptor method'.format(segment['name']))
return dot_graph
def Nnet3DescriptorToDot(descriptor, parent_node_name):
dot_lines = []
[segments, arguments] = descriptor_parser.IdentifyNestedSegments(descriptor)
if segments:
for segment in segments:
dot_lines += DescriptorSegmentToDot(segment, parent_node_name, parent_node_name)
elif arguments:
assert(len(arguments) == 1)
dot_lines.append("{0} -> {1}".format(GetDotNodeName(arguments[0])['node'], GetDotNodeName(parent_node_name)['node']))
return dot_lines
def ParseNnet3String(string):
if re.search('^input-node|^component|^output-node|^component-node|^dim-range-node', string.strip()) is None:
return [None, None]
parts = string.split()
config_type = parts[0]
fields = []
prev_field = ''
for i in range(1, len(parts)):
if re.search('=', parts[i]) is None:
prev_field += ' '+parts[i]
else:
if not (prev_field.strip() == ''):
fields.append(prev_field)
sub_parts = parts[i].split('=')
if (len(sub_parts) != 2):
raise Exception('Malformed config line {0}'.format(string))
fields.append(sub_parts[0])
prev_field = sub_parts[1]
fields.append(prev_field)
parsed_string = {}
try:
while len(fields) > 0:
value = re.sub(',$', '', fields.pop().strip())
key = fields.pop()
parsed_string[key.strip()] = value.strip()
except IndexError:
raise Exception('Malformed config line {0}'.format(string))
return [config_type, parsed_string]
# sample component config line
# component name=L0_lda type=FixedAffineComponent, input-dim=300, output-dim=300, linear-params-stddev=0.00992724, bias-params-stddev=0.573973
def Nnet3ComponentToDot(component_config, component_attributes = None):
label = ''
if component_attributes is None:
component_attributes = component_config.keys()
attributes_to_print = set(component_attributes).intersection(list(component_config.keys()))
# process the known fields
for key in attributes_to_print:
if key in component_config:
label += '{0} = {1}\
'.format(key, component_config[key])
attr_string = ''
try:
attributes = node_attributes[component_config['type']]
for key in attributes.keys():
attr_string += ' {0}={1} '.format(key, attributes[key])
except KeyError:
pass
return ['{0} [label="{1}" {2}]'.format(GetDotNodeName(component_config['name'], is_component = True)['node'], label, attr_string)]
# input-node name=input dim=40
def Nnet3InputToDot(parsed_config):
return ['{0} [ label="{1}\
dim={2}"]'.format(GetDotNodeName(parsed_config['name'])['node'], parsed_config['name'], parsed_config['dim'] )]
# output-node name=output input=Final_log_softmax dim=3940 objective=linear
#output-node name=output input=Offset(Final_log_softmax, 5) dim=3940 objective=linear
def Nnet3OutputToDot(parsed_config):
dot_graph = []
dot_graph += Nnet3DescriptorToDot(parsed_config['input'], parsed_config['name'])
dot_graph.append('{0} [ label="{1}\
objective={2}"]'.format(GetDotNodeName(parsed_config['name'])['node'], parsed_config['name'], parsed_config['objective']))
return dot_graph
# dim-range-node name=Lstm1_r_t input-node=Lstm1_rp_t dim-offset=0 dim=256
def Nnet3DimrangeToDot(parsed_config):
dot_graph = []
dot_node = GetDotNodeName(parsed_config['name'])
dot_graph.append('{0} [shape=rectangle, label="{1}"]'.format(dot_node['node'], dot_node['label']))
dot_graph.append('{0} -> {1} [taillabel="dimrange({2}, {3})"]'.format(GetDotNodeName(parsed_config['input-node'])['node'],
GetDotNodeName(parsed_config['name'])['node'],
parsed_config['dim-offset'],
parsed_config['dim']))
return dot_graph
def Nnet3ComponentNodeToDot(parsed_config):
dot_graph = []
dot_graph += Nnet3DescriptorToDot(parsed_config['input'], parsed_config['name'])
dot_node = GetDotNodeName(parsed_config['name'])
dot_graph.append('{0} [ label="{1}", shape=box ]'.format(dot_node['node'], dot_node['label']))
dot_graph.append('{0} -> {1} [ weight=10 ]'.format(GetDotNodeName(parsed_config['component'], is_component = True)['node'],
GetDotNodeName(parsed_config['name'])['node']))
return dot_graph
def GroupConfigs(configs, node_prefixes = None):
if node_prefixes is None:
node_prefixes = []
# we make the assumption that nodes belonging to the same sub-graph have a
# commong prefix.
grouped_configs = {}
for node_prefix in node_prefixes:
group = []
rest = []
for config in configs:
if re.search('^{0}'.format(node_prefix), config[1]['name']) is not None:
group.append(config)
else:
rest.append(config)
configs = rest
grouped_configs[node_prefix] = group
grouped_configs[None] = configs
return grouped_configs
def ParseConfigLines(lines, node_prefixes = None, component_attributes = None ):
if node_prefixes is None:
node_prefixes = []
config_lines = []
dot_graph=[]
configs = []
for line in lines:
config_type, parsed_config = ParseNnet3String(line)
if config_type is not None:
configs.append([config_type, parsed_config])
# process the config lines
grouped_configs = GroupConfigs(configs, node_prefixes)
for group in grouped_configs.keys():
configs = grouped_configs[group]
if not configs:
continue
if group is not None:
# subgraphs prefixed with cluster will be treated differently by
# dot
dot_graph.append('subgraph cluster_{0} '.format(group) + "{")
dot_graph.append('color=blue')
for config in configs:
config_type = config[0]
parsed_config = config[1]
if config_type is None:
continue
if config_type == 'input-node':
dot_graph += Nnet3InputToDot(parsed_config)
elif config_type == 'output-node':
dot_graph += Nnet3OutputToDot(parsed_config)
elif config_type == 'component-node':
dot_graph += Nnet3ComponentNodeToDot(parsed_config)
elif config_type == 'dim-range-node':
dot_graph += Nnet3DimrangeToDot(parsed_config)
elif config_type == 'component':
dot_graph += Nnet3ComponentToDot(parsed_config, component_attributes)
if group is not None:
dot_graph.append('label = "{0}"'.format(group))
dot_graph.append('}')
dot_graph.insert(0, 'digraph nnet3graph {')
dot_graph.append('}')
return dot_graph
if __name__ == "__main__":
parser = argparse.ArgumentParser(description="Converts the output of nnet3-am-info "
"to dot graph. The output has to be compiled"
" with dot to generate a displayable graph",
epilog="See steps/nnet3/nnet3_to_dot.sh for example.");
parser.add_argument("--component-attributes", type=str,
help="Attributes of the components which should be displayed in the dot-graph "
"e.g. --component-attributes name,type,input-dim,output-dim", default=None)
parser.add_argument("--node-prefixes", type=str,
help="list of prefixes. Nnet3 components/component-nodes with the same prefix"
" will be clustered together in the dot-graph"
" --node-prefixes Lstm1,Lstm2,Layer1", default=None)
parser.add_argument("dotfile", help="name of the dot output file")
print(' '.join(sys.argv), file=sys.stderr)
args = parser.parse_args()
component_attributes = None
if args.component_attributes is not None:
component_attributes = args.component_attributes.split(',')
node_prefixes = []
if args.node_prefixes is not None:
node_prefixes = args.node_prefixes.split(',')
lines = sys.stdin.readlines()
dot_graph = ParseConfigLines(lines, component_attributes = component_attributes, node_prefixes = node_prefixes)
dotfile_handle = open(args.dotfile, "w")
dotfile_handle.write("
".join(dot_graph))
dotfile_handle.close()
|