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tools/PACKAGE_MESURES_V1.0/backup/MyComputePosterior.sh
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reinitialized pro...
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#!/bin/bash
# /////// SET PATH ENV VAR
PATH=$PATH:$LIA_UTIL_PACK/PACKAGE_MESURES_V1.0/:/labo/Tools/lia_phon/script:./:/labo/Tools/lia_phon:/labo/Tools/SRI-LM-1.5.10/bin/i686-m64:/labo/Tools/SRI-LM-1.5.10/bin/
# /////// CONFIG FILE DIFINING ALL USEFULL GLOBAL VARS /////////
PACKAGE_CONF_MEASURE=$LIA_UTIL_PACK/data/cfg/package_measure.cfg
#------------------
# Parser les options
#-------------------
while getopts ":c:h" OPTION
do
case $OPTION in
h) #Display help
echo -e "$0 :"
echo -e "\tAuthor : Benjamin Lecouteux & Emmanuel FERREIRA (contact: emmanuel.ferreira0194@gmail.com)"
echo -e "\tVersion : 2.0"
echo -e "\tBrief : Process the asr first pass"
echo -e "\tUsage : $0 [OPTIONS] <(i) REP_IN>"
echo -e "\tOptions:"
echo -e "\t\tc) specify the path of the configuration file (default $PACKAGE_CONF_MEASURE)"
exit 1
;;
c) #Change the configuration file
FIRSTPASS_CFG_FILE=$OPTARG
;;
:)
echo "BAD USAGE : OPTION $OPTARG need a value"
exit 1
;;
\?)
echo "BAD USAGE : unknow option '$OPTARG'"
exit 1
;;
esac
done
#-------------------------------------------
# Shift options pour recuperation arguments
#-------------------------------------------
shift $((OPTIND-1))
if [ -z "$1" ]
then
echo "BAD USAGE: $0 <(i) repertoire (ex:20041006_0800_0900_CULTURE)>"
exit 1
fi
mkdir $1_CONF
NAME=`basename $1`
mkdir -p $1_CONF/${NAME}_REF
mkdir -p $1_CONF/${NAME}_POS
mkdir -p $1_CONF/${NAME}_MLCLASS
mkdir -p $1_CONF/${NAME}_GVALIGN
mkdir -p $1_CONF/${NAME}_WLAT1
mkdir -p $1_CONF/${NAME}_WLAT2
if [ $EXTEND == 1 ]
then
for file in `ls $1/$FICHIER_RES/*.res`
do
base=`basename $file .res`;
cat $file | cut -f5 -d' ' | tr "
" " " > $1_CONF/${NAME}_REF/${base}.ref
done
rm -fr $1_CONF/${NAME}_HTK
# -> Ajout des scores linguistiques dans le HTK
ls $1/$FICHIER_RES/*.treil > $1_CONF/Liste_treil_${NAME}.lst
echo "lattice-tool -read-htk -in-lattice-list $1_CONF/Liste_treil_${NAME}.lst -lm $ML -order $ORDER -htk-logbase 10 -htk-lmscale $FUDGE -htk-wdpenalty $PENALITE -write-htk -out-lattice-dir $1_CONF/${NAME}_HTK";
lattice-tool -read-htk -in-lattice-list $1_CONF/Liste_treil_${NAME}.lst -lm $ML -order $ORDER -htk-logbase 10 -htk-lmscale $FUDGE -htk-wdpenalty $PENALITE -write-htk -out-lattice-dir $1_CONF/${NAME}_HTK
MaxProcessPos=1
NbProcess=0
for file in `ls $1_CONF/${NAME}_HTK/*.treil`
do
base=`basename $file .treil`;
echo "lattice-tool -read-htk -in-lattice $file -compute-posteriors -write-htk -out-lattice $1_CONF/${NAME}_WLAT1/${base}.htk"
lattice-tool -read-htk -in-lattice $file -compute-posteriors -write-htk -out-lattice $1_CONF/${NAME}_WLAT1/${base}.htk &
NbProcess=$(( $NbProcess + 1))
if [ $NbProcess -ge $MaxProcessPos ]
then
wait
NbProcess=0
fi
done
wait
fi
if [ $FASTNC == 1 ]
then
# NbProcess=0
for file in `ls $1_CONF/${NAME}_HTK/*.treil`
do
base=`basename $file .treil`;
echo "./fastnc_v1.4 $1_CONF/${NAME}_WLAT1/${base}.htk $1_CONF/${NAME}_WLAT2/${base}.wlat $1/$FICHIER_RES/${base}.res rien -dtw2 > $1_CONF/${NAME}_POS/$base.pos2&"
fastnc_v1.4 $1_CONF/${NAME}_WLAT1/${base}.htk $1_CONF/${NAME}_WLAT2/${base}.wlat $1/$FICHIER_RES/${base}.res rien -dtw2 > $1_CONF/${NAME}_POS/$base.pos2 #&
# NbProcess=$(( $NbProcess + 1))
# if [ $NbProcess -ge $MaxProcess ]
# then
# wait
# NbProcess=0
# fi
done
# wait
fi
if [ $PPL == 1 ]
then
echo "well done";
compteur=0
rm -f $1_CONF/${NAME}_ALLREF.txt
for file in `du -sh $1_CONF/${NAME}_REF/*.ref | grep -v "^0" | cut -f2`
do
base=`basename $file .ref`;
cat $file >> $1_CONF/${NAME}_ALLREF.txt
echo "" >> $1_CONF/${NAME}_ALLREF.txt
ListeFichiers[$compteur]=$base.mlclass
compteur=$(( $compteur + 1 ))
done
ngram -lm $ML -order $ORDER -ppl $1_CONF/${NAME}_ALLREF.txt -debug 2 > $1_CONF/${NAME}_ALLREF.mlclass
compteur=0
rm -f $1_CONF/${NAME}_MLCLASS/*
mkdir -p $1_CONF/${NAME}_MLCLASS
cat $1_CONF/${NAME}_ALLREF.mlclass | while read line
do
echo $line | grep "^$" > /dev/null
if [ $? == 0 ]
then
compteur=$(( $compteur + 1 ))
else
echo "$line" | grep "p(" > /dev/null
if [ $? == 0 ]
then
echo "$line" >> $1_CONF/${NAME}_MLCLASS/${ListeFichiers[${compteur}]};
fi
fi
done
fi
if [ $GVALIGN == 1 ]
then
ls $1_CONF/${NAME}_REF | cut -f1 -d\. > $1_CONF/${NAME}_LISTE_REF.lst
rm $1_CONF/${NAME}_GVALIGN/*
for file in `ls $1/$FICHIER_RES/*.res`
do
echo "./MakeListForGVAlign.pl $file $1_CONF/${NAME}_GVALIGN";
MakeListForGVAlign.pl $file $1_CONF/${NAME}_GVALIGN
done
mkdir -p $1_CONF/${NAME}_GVCTM
mkdir -p $1_CONF/${NAME}_SEGCTM
mkdir -p $1_CONF/${NAME}_LIKELIHOOD
NbProcess=0
for file in `ls $1_CONF/${NAME}_GVALIGN/*.gvalign`
do
base=`basename $file .gvalign`;
type=`basename "$file" .gvalign | cut -f2 -d: | cut -f2- -d\# | sed -e "s/[0-9]\+//"`
case "$type" in
"M#S")
HMM=$mod_ms
;;
"F#S")
HMM=$mod_fs
;;
"M#T")
HMM=$mod_mt
;;
"F#T")
HMM=$mod_ft
;;
esac
echo "gvalign.old $HMM $PHON $file -e $1/${REP_PLP}/ -f .plp -r $1_CONF/${NAME}_GVALIGN -g .gv -C FAST -W ${NAME}_CONF/$1_GVCTM -O CTM -s $1_CONF/${NAME}_SEGCTM > $1_CONF/${NAME}_LIKELIHOOD/${base}.likelihood &";
gvalign.old $HMM $PHON $file -e $1/${REP_PLP}/ -f .plp -r $1_CONF/${NAME}_GVALIGN -g .gv -C FAST -W $1_CONF/${NAME}_GVCTM -O CTM -s $1_CONF/${NAME}_SEGCTM > $1_CONF/${NAME}_LIKELIHOOD/${base}.likelihood &
NbProcess=$(( $NbProcess + 1))
if [ $NbProcess -ge $MaxProcess ]
then
wait
NbProcess=0
fi
done
wait
for file in `ls $1_CONF/${NAME}_GVALIGN/*.gvalign`
do
cat $1_CONF/${NAME}_LIKELIHOOD/${base}.likelihood | sed -e 's/Decoding/
Decoding/g' > $1_CONF/${NAME}_LIKELIHOOD/${base}.likelihood2
mv -f $1_CONF/${NAME}_LIKELIHOOD/${base}.likelihood2 $1_CONF/${NAME}_LIKELIHOOD/${base}.likelihood
done
fi
if [ $EXTRACT == 1 ]
then
mkdir -p $1_CONF/${NAME}_SUPER_CTM
NbProcess=0
for file in `ls $1/$FICHIER_RES/*.res`
do
base=`basename $file .res`;
like=`echo "$base" | sed -e 's/\..*//'`;
echo "./ExtractData.pl $pathML $nameML $1_CONF/${NAME}_POS/${base}.pos2 $file $1_CONF/${NAME}_LIKELIHOOD/${like}.likelihood $1_CONF/${NAME}_MLCLASS/${base}.mlclass $TYPE_ML > $1_CONF/${NAME}_SUPER_CTM/${base}.ctm &";
ExtractData.pl $pathML $nameML $1_CONF/${NAME}_POS/${base}.pos2 $file $1_CONF/${NAME}_LIKELIHOOD/${like}.likelihood $1_CONF/${NAME}_MLCLASS/${base}.mlclass $TYPE_ML > $1_CONF/${NAME}_SUPER_CTM/${base}.ctm &
NbProcess=$(( $NbProcess + 1))
if [ $NbProcess -ge $MaxProcess ]
then
wait
NbProcess=0
fi
done
wait
fi
# PHASE D APPRENTISSAGE
if [ 0 == 1 ]
then
AnalyserErreursAvecPRF_EtTaggerLesFichiersRES.pl Dev.prf ERR > MotsFauxDev.lst
AnalyserErreursAvecPRF_EtTaggerLesFichiersRES.pl Dev.prf OK > MotsVraiDev.lst
AnalyserErreursAvecPRF_EtTaggerLesFichiersRES.pl Test.prf ERR > MotsFauxTest.lst
AnalyserErreursAvecPRF_EtTaggerLesFichiersRES.pl Test.prf OK > MotsVraiTest.lst
mkdir -p TOUS_SUPER_CTM_TEST
mkdir -p TOUS_SUPER_CTM_DEV
for i in `cat ../HeuresTest.txt`; do for j in `ls ../${i}_SUPER_CTM/`; do ln -s ../${i}_SUPER_CTM/$j; done; done
for i in `cat ../HeuresDev.txt` ; do for j in `ls ../${i}_SUPER_CTM/`; do ln -s ../${i}_SUPER_CTM/$j; done; done
DissociateErroneousFromDecodedTrain.pl MotsFauxDev.lst TOUS_SUPER_CTM_DEV 2 equilibre ERR > ERR_DEV.sctm
DissociateErroneousFromDecodedTrain.pl MotsVraiDev.lst TOUS_SUPER_CTM_DEV 2 equilibre OK > OK_DEV.sctm
DissociateErroneousFromDecodedTrain.pl MotsFauxTest.lst TOUS_SUPER_CTM_TEST 2 equilibre ERR > ERR_TEST.sctm
DissociateErroneousFromDecodedTrain.pl MotsVraiTest.lst TOUS_SUPER_CTM_TEST 2 equilibre OK > OK_TEST.sctm
ConvertSuperCTMtoDataSVM.pl ERR_DEV.sctm boost 2 0 0 > ERR_DEV.boost
ConvertSuperCTMtoDataSVM.pl ERR_TEST.sctm boost 2 0 0 > ERR_TEST.boost
ConvertSuperCTMtoDataSVM.pl OK_TEST.sctm boost 2 0 0 > OK_TEST.boost
ConvertSuperCTMtoDataSVM.pl OK_DEV.sctm boost 2 0 0 > OK_DEV.boost
cat ERR_DEV.boost OK_DEV.boost > TRAIN.data
cat ERR_TEST.boost OK_TEST.boost > TRAIN.test
icsiboost-64bit-static-r160 -S TRAIN --jobs 16 -n 1000
icsiboost-64bit-static-r160 -S TRAIN -C --posteriors < TRAIN.data > resultatsTRAIN.res
icsiboost-64bit-static-r160 -S TRAIN -C --posteriors < TRAIN.test > resultatsTEST.res
optimal_threshold.pl -bs < resultatsTRAIN.res
fi
if [ $BOOST == 1 ]
then
# utilise pour le test sans etiquette
DissociateErroneousFromDecoded.pl $1_CONF/${NAME}_SUPER_CTM 2 equilibre > $1_CONF/${NAME}.sctm
ConvertSuperCTMtoDataSVM.pl $1_CONF/${NAME}.sctm boost 2 0 0 > $1_CONF/${NAME}.boost
ConvertSuperCTMtoDataSVM.pl $1_CONF/${NAME}.sctm boost 2 0 1 > $1_CONF/${NAME}.boost_refs
icsiboost-64bit-static-r160 -S $LIA_UTIL_PACK/PACKAGE_MESURES_V1.0/TRAIN -C --posteriors < $1_CONF/${NAME}.boost > $1_CONF/${NAME}.resboost
cat $1_CONF/${NAME}.resboost | cut -f4 -d" " > $1_CONF/${NAME}.resboost2
cat $1_CONF/${NAME}.boost_refs | sed -e 's/.*ref=//' > $1_CONF/${NAME}.corres
paste $1_CONF/${NAME}.corres $1_CONF/${NAME}.resboost2 | sed -e 's/\.ctm/\.res/' > $1_CONF/${NAME}.corres2
mkdir -p $1_${FICHIER_RES}_align
AssociateScoreToCtm.pl $1_CONF/${NAME}.corres2 $1/$FICHIER_RES/ $1_${FICHIER_RES}_align/
fi
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