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scripts/data-management/filter_ids.py
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ef2588651 Filter the given ... |
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import argparse from os.path import isfile from volia.data_io import read_lst if __name__ == "__main__": parser = argparse.ArgumentParser(description="Filter ids of the given file to only keep a subset") parser.add_argument("file", type=str, help="") parser.add_argument("--filter", default=None, type=str, help="") parser.add_argument("--outfile", default="out.txt", type=str, help="") args = parser.parse_args() assert args.filter is not None assert isfile(args.file) list_ = read_lst(args.file) filter_ = read_lst(args.filter) with open(args.outfile, "w") as of: for key in filter_.keys(): of.write(key + " " + " ".join(list_[key]) + " ") print("File filtered and written in: ", args.outfile) |