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lib/context/concept_model.rb
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#!/usr/bin/env ruby require 'lda-ruby' require 'peach' class ConceptModel attr_reader :concepts,:documents,:source,:nbdocs,:nbterms,:query,:total_coherence,:doc_scores,:doc_names,:theta,:entropy_coherence,:avg_coherence def ConceptModel.parse_hdp str concepts = [] eval(str).each do |hdp_top| c = Concept.new hdp_top.gsub(/topic \d: /,'').split(" + ").each do |words| ee = words.split('*') begin e = ConceptualElement.new ee[1],ee[0].to_f c << e rescue ArgumentError next end end concepts << c end concepts end def initialize query,source,nb_docs,nb_terms=10,k=false raise ArgumentError, 'Argument 1 must be a String.' unless query.is_a? String raise ArgumentError, 'Argument 2 must be a valid Index key.' unless Context::IndexPaths.has_key?(source.to_sym) @source = source.to_sym @nbdocs = nb_docs @nbterms = nb_terms @query = query @concepts = [] @total_coherence = 0.0 corpus = Lda::Corpus.new @documents,@doc_scores,@doc_names = Context.feedback_docs Context::IndexPaths[@source],@query,@nbdocs @documents.each do |d| doc = Lda::TextDocument.new corpus,d corpus.add_document doc end if k == false num_topics = topic_divergence corpus else num_topics = k end lda = Lda::Lda.new corpus lda.verbose=false lda.num_topics = num_topics lda.em('random') @beta = lda.beta # to avoid repeated expensive computation @vocab = lda.vocab # @theta = lda.compute_topic_document_probability # Normalizing the phi_t(w) weights for each topic # total_prob = {} tmp_top_word_indices(@nbterms,@vocab,@beta).each_pair do |topic,indices| total_prob[topic] = indices.inject(0.0) { |res,i| res + Math.exp(@beta[topic][i].to_f) } end tmp_top_word_indices(@nbterms,@vocab,@beta).each_pair do |topic,indices| c = Concept.new indices.each do |i| begin e = ConceptualElement.new @vocab[i],(Math.exp(@beta[topic][i].to_f)/total_prob[topic]) c << e rescue ArgumentError next end end c.compute_coherence @doc_scores,@theta,topic # c.compute_coherence @doc_scores,gamma_m,topic # takes time since it has to compute several probabilities @concepts << c @total_coherence += c.coherence end end def to_s @concepts.collect do |c| "#{c.coherence/@total_coherence} => [#{c.elements.collect do |e| "#{e.prob} #{e.word}" end.join(', ') }]" end.join " " end def to_indriq "#weight( #{@concepts.collect do |c| "#{c.coherence/@total_coherence} #weight ( #{c.elements.collect do |e| "#{e.prob} #{e.word}" end.join(' ') } ) " end.join " "} )" end def <<(concept) raise ArgumentError, 'Argument must be a Concept.' unless elem.is_a? Concept @concepts << concept end def avg_model_coherence if @documents.empty? @avg_coherence = 0.0 else @avg_coherence = @concepts.inject(0.0) { |res,c| res + c.uci_coherence }/@concepts.count #if @avg_coherence.nil? end @avg_coherence end def entropy_model_coherence if @documents.empty? @entropy_coherence = 0.0 else @entropy_coherence = @concepts.inject(0.0) do |res,c| ent = c.uci_coherence_entropy ent += 0.0000000000000000000000001 if ent.zero? res + ent*Math.log(ent) end #if @entropy_coherence.nil? end @entropy_coherence end private def topic_divergence corpus max_kl = 0.0 # Old trick to limit number of iterations # num_p = @nbdocs < 6 ? @nbdocs + 5 : @nbdocs semaphore = Mutex.new 1.upto(20).inject do |k,ntop| # 1.upto(num_p).inject do |k,ntop| lda = Lda::Lda.new corpus lda.verbose=false lda.num_topics = ntop lda.em('random') beta_m = lda.beta # to avoid repeated expensive computation vocab = lda.vocab topics_i = Array.new(ntop) { |i| i } sum_kl = topics_i.combination(2).inject(0.0) do |kl,topics| ti = topics.first tj = topics.last begin kl + 0.upto(vocab.count-1).inject(0.0) do |res,w_i| res + ( Math.exp(beta_m[ti][w_i])*Math.log(Math.exp(beta_m[ti][w_i])/Math.exp(beta_m[tj][w_i])) + Math.exp(beta_m[tj][w_i])*Math.log(Math.exp(beta_m[tj][w_i])/Math.exp(beta_m[ti][w_i])) ) end rescue kl + 0.0 end end sum_kl /= ntop*(ntop-1) sum_kl = max_kl if sum_kl.nan? || sum_kl.infinite? sum_kl <= max_kl ? k : (max_kl = sum_kl and ntop) end end def tmp_top_word_indices(words_per_topic = 10,vocab,beta) raise 'No vocabulary loaded.' unless vocab # find the highest scoring words per topic topics = Hash.new indices = (0...vocab.size).to_a beta.each_with_index do |topic, topic_num| topics[topic_num] = (topic.zip((0...vocab.size).to_a).sort { |i, j| i[0] <=> j[0] }.map { |i, j| j }.reverse)[0...words_per_topic] end topics end end |