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egs/wsj/s5/steps/nnet3/convert_nnet2_to_nnet3.py
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#!/usr/bin/env python # Copyright 2017 Joachim Fainberg. # This script converts nnet2 models into nnet3 models. # It requires knowledge of valid components which # can be modified in the configuration section below. from __future__ import print_function import argparse, os, tempfile, logging, sys, shutil, fileinput, re from collections import defaultdict, namedtuple import numpy as np sys.path.insert(0, 'steps/') import libs.nnet3.train.common as common_train_lib import libs.common as common_lib # Begin configuration section # Components and their corresponding node names NODE_NAMES = { "<AffineComponent>":"affine", "<AffineComponentPreconditioned>":"affine", "<AffineComponentPreconditionedOnline>":"affine", "<BlockAffineComponent>":"affine", "<BlockAffineComponentPreconditioned>":"affine", "<SigmoidComponent>":"nonlin", "<TanhComponent>":"nonlin", "<PowerComponent>":"nonlin", "<RectifiedLinearComponent>":"nonlin", "<SoftHingeComponent>":"nonlin", "<PnormComponent>":"nonlin", "<NormalizeComponent>":"renorm", "<MaxoutComponent>":"maxout", "<MaxpoolingComponent>":"maxpool", "<ScaleComponent>":"rescale", "<DropoutComponent>":"dropout", "<SoftmaxComponent>":"softmax", "<LogSoftmaxComponent>":"log-softmax", "<FixedScaleComponent>":"fixed-scale", "<FixedAffineComponent>":"fixed-affine", "<FixedLinearComponent>":"fixed-linear", "<FixedBiasComponent>":"fixed-bias", "<PermuteComponent>":"permute", "<AdditiveNoiseComponent>":"noise", "<Convolutional1dComponent>":"conv", "<SumGroupComponent>":"sum-group", "<DctComponent>":"dct", "<SpliceComponent>":"splice", "<SpliceMaxComponent>":"splice" } SPLICE_COMPONENTS = [c for c in NODE_NAMES if "Splice" in c] AFFINE_COMPONENTS = [c for c in NODE_NAMES if "Affine" in c] KNOWN_COMPONENTS = list(NODE_NAMES.keys()) # End configuration section logger = logging.getLogger(__name__) logger.setLevel(logging.INFO) handler = logging.StreamHandler() handler.setLevel(logging.INFO) formatter = logging.Formatter("%(asctime)s [%(filename)s:%(lineno)s - " "%(funcName)s - %(levelname)s ] %(message)s") handler.setFormatter(formatter) logger.addHandler(handler) def GetArgs(): parser = argparse.ArgumentParser( description="Converts nnet2 into nnet3 models.", epilog="""e.g. steps/nnet3/convert_nnet2_to_nnet3.py exp/tri4_nnet2 exp/tri4_nnet3""") parser.add_argument("--tmpdir", type=str, default="./", help="Custom location for the temporary directory.") parser.add_argument("--skip-cleanup", action='store_true', help="Will not remove the temporary directory.") parser.add_argument("--model", type=str, default='final.mdl', help="Choose a specific model to convert.") parser.add_argument("--binary", type=str, default="true", choices=["true","false"], help="Whether to write the model in binary or not.") parser.add_argument("nnet2_dir", metavar="src-nnet2-dir", type=str, help="") parser.add_argument("nnet3_dir", metavar="src-nnet3-dir", type=str, help="") print(' '.join(sys.argv)) args = parser.parse_args() if not os.path.exists(args.nnet3_dir): os.makedirs(args.nnet3_dir) if args.tmpdir and not os.path.exists(args.tmpdir): os.makedirs(args.tmpdir) return args class Nnet3Model(object): """Holds configuration for an Nnet3 model.""" def __init__(self): self.input_dim = -1 self.output_dim = -1 self.ivector_dim = -1 self.counts = defaultdict(int) self.num_components = 0 self.components_read = 0 self.config = "" self.transition_model = "" self.priors = "" self.components = [] def add_component(self, component, pairs): """Adds components to the model. Takes a dictionary of key-value pairs. """ self.components_read += 1 Component = namedtuple("Component", "ident component pairs") if "<InputDim>" in pairs and self.input_dim == -1: self.input_dim = int(pairs["<InputDim>"]) if "<ConstComponentDim>" in pairs and self.ivector_dim == -1: self.ivector_dim = int(pairs["<ConstComponentDim>"]) # remove nnet2 specific tokens and catch descriptors if component == "<PnormComponent>" and "<P>" in pairs: pairs.pop("<P>") elif component in SPLICE_COMPONENTS: self.components.append(Component("splice", component, pairs)) return # format pairs: {'<InputDim>':43} -> {'input-dim':43} pairs = ["{0}={1}".format(token_to_string(key), pairs[key]) for key in pairs] # keep track of layer type number (e.g. affine3) node_name = NODE_NAMES[component] self.counts[node_name] += 1 # e.g. affine3 ident = node_name + str(self.counts[node_name]) # <PnormComponent> -> PnormComponent component = component[1:-1] self.components.append(Component(ident, component, pairs)) def write_config(self, filename): """Write config to filename.""" logger.info("Writing config to {0}".format(filename)) self.config = filename with open(filename, 'w') as f: for component in self.components: if component.ident == "splice": continue config_string = ' '.join(component.pairs) f.write("component name={name} type={comp_type} {config_string}" " ".format(name=component.ident, comp_type=component.component, config_string=config_string)) f.write(" # Component nodes ") if self.ivector_dim != -1: f.write("input-node name=input dim={0} ".format(self.input_dim-self.ivector_dim)) f.write("input-node name=ivector dim={0} ".format(self.ivector_dim)) else: f.write("input-node name=input dim={0} ".format(self.input_dim)) previous_component = "input" for component in self.components: if component.ident == "splice": # Create splice string for the next node previous_component = make_splice_string(previous_component, component.pairs["<Context>"], component.pairs["<ConstComponentDim>"]) continue f.write("component-node name={name} component={name} " "input={inp} ".format(name=component.ident, inp=previous_component)) previous_component = component.ident logger.warning("Assuming linear objective.") f.write("output-node name=output input={inp} objective={obj}" " ".format(inp=previous_component, obj='linear')) def write_model(self, model, binary="true"): if not os.path.exists(self.config): raise IOError("Config file {0} does not exist.".format(self.config)) # write raw model common_lib.execute_command("nnet3-init --binary=true {0} {1}" .format(self.config, os.path.join(tmpdir, "nnet3.raw"))) # add transition model common_lib.execute_command("nnet3-am-init --binary=true {0} {1} {2}" .format(self.transition_model, os.path.join(tmpdir, "nnet3.raw"), os.path.join(tmpdir, "nnet3_no_prior.mdl"))) # add priors common_lib.execute_command("nnet3-am-adjust-priors " "--binary={0} {1} {2} {3}" .format(binary, os.path.join(tmpdir, "nnet3_no_prior.mdl"), self.priors, model)) def parse_nnet2_to_nnet3(line_buffer): """Reads an Nnet2 model into an Nnet3 object. Parses by passing line_buffer objects depending upon the current place or component being read. Returns Nnet3 object. """ model = Nnet3Model() # <TransitionModel> ... model.transition_model = parse_transition_model(line_buffer) # <Nnet> <NumComponents> ... line, model.num_components = parse_nnet2_header(line_buffer) # Parse remaining components while True: if line.startswith("</Components>"): break component, pairs = parse_component(line, line_buffer) model.add_component(component, pairs) line = next(line_buffer) model.priors = parse_priors(line, line_buffer) if model.components_read != model.num_components: logger.error("Did not read all components succesfully: {0}/{1}" .format(model.components_read, model.num_components)) return model def parse_transition_model(line_buffer): """Writes transition model to text file. Returns filename. """ line = next(line_buffer) assert line.startswith("<TransitionModel>") transition_model = os.path.join(tmpdir, "transition_model") with open(transition_model, 'w') as fc: fc.write(line) while True: line = next(line_buffer) fc.write(line) if line.startswith("</TransitionModel>"): break return transition_model def parse_nnet2_header(line_buffer): """Returns number of components in Nnet2 header.""" line = next(line_buffer) assert line.startswith("<Nnet>") line = consume_token("<Nnet>", line) num_components = int(line.split()[1]) line = line.partition(str(num_components))[2] line = consume_token("<Components>", line) return line, num_components def parse_component(line, line_buffer): component = line.split()[0] pairs = {} if component in SPLICE_COMPONENTS: line, pairs = parse_splice_component(component, line, line_buffer) elif component in AFFINE_COMPONENTS: pairs = parse_affine_component(component, line, line_buffer) elif component == "<FixedScaleComponent>": pairs = parse_fixed_scale_component(component, line, line_buffer) elif component == "<FixedBiasComponent>": pairs = parse_fixed_bias_component(component, line, line_buffer) elif component == "<SumGroupComponent>": pairs = parse_sum_group_component(component, line, line_buffer) elif component in KNOWN_COMPONENTS: pairs = parse_standard_component(component, line, line_buffer) else: raise LookupError("Unrecognised component, {0}.".format(component)) parse_end_of_component(component, line, line_buffer) return component, pairs def parse_standard_component(component, line, line_buffer): # Ignores stats such as ValueSum and DerivSum line = consume_token(component, line) pairs = re.findall("(<\w+>) ([\w.]+)", line) return dict(pairs) def parse_fixed_scale_component(component, line, line_buffer): line = consume_token(component, line) line = consume_token("<Scales>", line) scales = np.array([parse_vector(line)]) _, filename = tempfile.mkstemp(dir=tmpdir) with open(filename, 'w') as f: f.write("[ ") np.savetxt(f, scales, newline='') f.write(" ]") return {"<Scales>" : filename} def parse_sum_group_component(component, line, line_buffer): line = consume_token(component, line) line = consume_token("<Sizes>", line) sizes = line.strip().strip("[]").strip().replace(' ', ',') return {"<Sizes>" : sizes} def parse_fixed_bias_component(component, line, line_buffer): line = consume_token(component, line) line = consume_token("<Bias>", line) scales = np.array([parse_vector(line)]) _, filename = tempfile.mkstemp(dir=tmpdir) with open(filename, 'w') as f: f.write("[ ") np.savetxt(f, scales, newline='') f.write(" ]") return {"<Bias>" : filename} def parse_splice_component(component, line, line_buffer): if component == "<SpliceMaxComponent>": raise NotImplementedError("Script doesn't support SpliceMaxComponent.") line = consume_token(component, line) line = consume_token("<InputDim>", line) [input_dim, _, line] = line.strip().partition(' ') line = consume_token("<Context>", line) context = line.strip()[1:-1].split() const_component_dim = 0 line = next(line_buffer) # Context vector adds newline line = consume_token("<ConstComponentDim>", line) const_component_dim = int(line.strip().split()[0]) return line, {"<InputDim>" : input_dim, "<Context>" : context, "<ConstComponentDim>" : const_component_dim} def parse_end_of_component(component, line, line_buffer): # Keeps reading until it hits the end tag for component end_component = "</" + component[1:] while end_component not in line: line = next(line_buffer) return def parse_affine_component(component, line, line_buffer): assert ("<LinearParams>" in line) pairs = dict(re.findall("(<\w+>) ([\w.]+)", line)) # read the linear params and bias and convert it to a matrix weights = parse_weights(line_buffer) bias = parse_bias(next(line_buffer)) matrix = np.concatenate([weights, bias.T], axis=1) # write matrix and return pairs with filename _, filename = tempfile.mkstemp(dir=tmpdir) with open(filename, 'w') as f: f.write("[ ") np.savetxt(f, matrix) f.write(" ]") pairs["<Matrix>"] = filename return pairs def parse_weights(line_buffer): weights = [] while True: line = next(line_buffer) if line.strip().endswith("["): continue elif line.strip().endswith("]"): weights.append(parse_vector(line)) break else: weights.append(parse_vector(line)) return np.array(weights) def parse_bias(line): if "<BiasParams>" in line: line = consume_token("<BiasParams>", line) return np.array([parse_vector(line)]) def parse_vector(line): vector = line.strip().strip("[]") return np.array([float(x) for x in vector.split()], dtype="float32") def parse_priors(line, line_buffer): vector = parse_vector(line.partition('[')[2]) priors = os.path.join(tmpdir, "priors") with open(priors, 'w') as f: f.write("[ ") np.savetxt(f, vector, newline=' ') f.write(" ]") return priors def token_to_string(token): """Converts tokens to lowercase, hyphen-bounded strings. E.g. <InputDim> -> input-dim """ string = token[1:-1] string = re.sub(r"((?<=[a-z])[A-Z]|(?<!\A)[A-Z](?=[a-z]))", r'-\1', string).lower() return string def consume_token(token, line): """Returns line without token""" if token != line.split(None, 1)[0]: logger.error("Unexpected token, expected '{0}', got '{1}'." .format(token, line.split(None, 1)[0])) return line.partition(token)[2] def make_splice_string(nodename, context, const_component_dim=0): """Generates splice string from a list of context. E.g. make_splice_string("renorm4", [-4, 4]) returns "Append(Offset(renorm4, -4), Offset(renorm4, 4))" """ assert type(context) == list, "context argument must be a list" string = ["Offset({0}, {1})".format(nodename, i) for i in context] if const_component_dim > 0: string.append("ReplaceIndex(ivector, t, 0)") string = "Append(" + ", ".join(string) + ")" return string tmpdir = "" def Main(): args = GetArgs() logger.info("Converting nnet2 model {0} to nnet3 model {1}" .format(os.path.join(args.nnet2_dir, args.model), os.path.join(args.nnet3_dir, args.model))) global tmpdir tmpdir = tempfile.mkdtemp(dir=args.tmpdir) # Convert nnet2 model to text and remove preconditioning common_lib.execute_command("nnet-am-copy " "--remove-preconditioning=true --binary=false {0}/{1} {2}/{1}" .format(args.nnet2_dir, args.model, tmpdir)) # Parse nnet2 and return nnet3 object with open(os.path.join(tmpdir, args.model)) as f: nnet3 = parse_nnet2_to_nnet3(f) # Write model nnet3.write_config(os.path.join(tmpdir, "config")) nnet3.write_model(os.path.join(args.nnet3_dir, args.model), binary=args.binary) if not args.skip_cleanup: shutil.rmtree(tmpdir) else: logger.info("Not removing temporary directory {0}".format(tmpdir)) logger.info("Wrote nnet3 model to {0}".format(os.path.join(args.nnet3_dir, args.model))) if __name__ == "__main__": Main() |