yomdle2csv.py
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#!/usr/bin/env python3
'''
GEDI2CSV
Convert GEDI-type bounding boxes to CSV format
'''
import logging
import os
import sys
import time
import glob
import csv
import imghdr
from PIL import Image
import argparse
import pdb
import cv2
import numpy as np
import xml.etree.ElementTree as ET
sin = np.sin
cos = np.cos
pi = np.pi
def Rotate2D(pts, cnt, ang=90):
M = np.array([[cos(ang),-sin(ang)],[sin(ang),cos(ang)]])
res = np.dot(pts-cnt,M)+cnt
return M, res
def npbox2string(npar):
if np.shape(npar)[0] != 1:
print('Error during CSV conversion\n')
c1,r1 = npar[0][0],npar[0][1]
c2,r2 = npar[0][2],npar[0][3]
c3,r3 = npar[0][4],npar[0][5]
c4,r4 = npar[0][6],npar[0][7]
return c1,r1,c2,r2,c3,r3,c4,r4
# cv2.minAreaRect() returns a Box2D structure which contains following detals - ( center (x,y), (width, height), angle of rotation )
# Get 4 corners of the rectangle using cv2.boxPoints()
class GEDI2CSV(object):
''' Initialize the extractor'''
def __init__(self, logger, args):
self._logger = logger
self._args = args
'''
Segment image with GEDI bounding box information
'''
def csvfile(self, coords, polys, baseName, pgrot):
''' for writing the files '''
writePath = self._args.outputDir
if os.path.isdir(writePath) != True:
os.makedirs(writePath)
rotlist = []
header=['ID','name','col1','row1','col2','row2','col3','row3','col4','row4','confidence','truth','pgrot','bbrot','qual','script','lang']
conf=100
pgrot = 0
bbrot = 0
qual = 0
script = ''
write_ctr = 0
if len(coords) == 0 and len(polys) == 0:
self._logger.info('Found %s with no text content',(baseName))
print('...Found %s with no text content' % (baseName))
return
strPos = writePath + baseName
for j in polys:
try:
arr = []
[id,poly_val,text,qual,lang] = j
script=None
#print(j)
for i in poly_val:
if len(i.strip()) > 0:
#print(i)
arr.append(eval(i))
contour = np.asarray(arr)
#print(contour)
convex = cv2.convexHull(contour)
rect = cv2.minAreaRect(convex)
box = cv2.boxPoints(rect)
box = np.int0(box)
box = np.reshape(box,(-1,1)).T
c1,r1,c2,r2,c3,r3,c4,r4 = npbox2string(box)
bbrot = 0.0
rotlist.append([id,baseName + '_' + id + '.png',c1,r1,c2,r2,c3,r3,c4,r4,conf,text,pgrot,bbrot,qual,script,lang])
except:
print('...polygon error %s, %s' % (j, baseName))
continue
# then write out all of list to file
with open(strPos + ".csv", "w", encoding="utf-8") as f:
writer = csv.writer(f)
writer.writerow(header)
for row in rotlist:
writer.writerow(row)
write_ctr += 1
return write_ctr
def main(args):
startTime = time.clock()
writePath = args.outputDir
print('write to %s' % (writePath))
if os.path.isdir(writePath) != True:
os.makedirs(writePath)
''' Setup logging '''
logger = logging.getLogger(__name__)
logger.setLevel(logging.INFO)
if args.log:
handler = logging.FileHandler(args.log)
handler.setLevel(logging.INFO)
formatter = logging.Formatter('%(asctime)s - %(name)s - %(levelname)s - %(message)s')
handler.setFormatter(formatter)
logger.addHandler(handler)
gtconverter = GEDI2CSV(logger, args)
namespaces = {"gedi" : "http://lamp.cfar.umd.edu/media/projects/GEDI/"}
keyCnt=0
fileCnt = 0
line_write_ctr = 0
line_error_ctr = 0
file_error_ctr = 0
'''
Get all XML files in the directory and sub folders
'''
print('reading %s' % (args.inputDir))
for root, dirnames, filenames in os.walk(args.inputDir, followlinks=True):
for file in filenames:
if file.lower().endswith('.xml'):
fullName = os.path.join(root,file)
baseName = os.path.splitext(fullName)
fileCnt += 1
try:
''' read the XML file '''
tree = ET.parse(fullName)
except:
print('...ERROR parsing %s' % (fullName))
file_error_ctr += 1
continue
gedi_root = tree.getroot()
child = gedi_root.findall('gedi:DL_DOCUMENT',namespaces)[0]
totalpages = int(child.attrib['NrOfPages'])
coordinates=[]
polygons = []
''' and for each page '''
for i, pgs in enumerate(child.iterfind('gedi:DL_PAGE',namespaces)):
if 'GEDI_orientation' not in pgs.attrib:
pageRot=0
else:
pageRot = int(pgs.attrib['GEDI_orientation'])
logger.info(' PAGE ROTATION %s, %s' % (fullName, str(pageRot)))
''' find children for each page '''
for zone in pgs.findall('gedi:DL_ZONE',namespaces):
if zone.attrib['gedi_type']=='Text' :
if zone.get('polygon'):
keyCnt+=1
polygons.append([zone.attrib['id'],zone.get('polygon').split(';'),
zone.get('Text_Content'),zone.get('Illegible'),zone.get('Language')])
else:
print('...Not polygon')
if len(coordinates) > 0 or len(polygons) > 0:
line_write_ctr += gtconverter.csvfile(coordinates, polygons, os.path.splitext(file)[0], pageRot)
else:
print('...%s has no text content' % (baseName[0]))
print('complete...total files %d, lines written %d, img errors %d, line error %d' % (fileCnt, line_write_ctr, file_error_ctr, line_error_ctr))
''' Args and defaults '''
def parse_arguments(argv):
parser = argparse.ArgumentParser()
parser.add_argument('--inputDir', type=str, help='Input directory', default='/data/YOMDLE/final_arabic/xml')
parser.add_argument('--outputDir', type=str, help='Output directory', default='/exp/YOMDL/final_arabic/csv_truth/')
parser.add_argument('--log', type=str, help='Log directory', default='/exp/logs.txt')
return parser.parse_args(argv)
''' Run '''
if __name__ == '__main__':
main(parse_arguments(sys.argv[1:]))