mle-diag-gmm-test.cc
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// gmm/mle-diag-gmm-test.cc
// Copyright 2009-2011 Georg Stemmer; Jan Silovsky; Saarland University;
// Microsoft Corporation; Yanmin Qian
// See ../../COPYING for clarification regarding multiple authors
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// THIS CODE IS PROVIDED *AS IS* BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
// KIND, EITHER EXPRESS OR IMPLIED, INCLUDING WITHOUT LIMITATION ANY IMPLIED
// WARRANTIES OR CONDITIONS OF TITLE, FITNESS FOR A PARTICULAR PURPOSE,
// MERCHANTABLITY OR NON-INFRINGEMENT.
// See the Apache 2 License for the specific language governing permissions and
// limitations under the License.
#include "gmm/diag-gmm.h"
#include "gmm/diag-gmm-normal.h"
#include "gmm/mle-diag-gmm.h"
#include "util/kaldi-io.h"
using namespace kaldi;
void TestComponentAcc(const DiagGmm &gmm, const Matrix<BaseFloat> &feats) {
MleDiagGmmOptions config;
AccumDiagGmm est_atonce; // updates all components
AccumDiagGmm est_compwise; // updates single components
// Initialize estimators
est_atonce.Resize(gmm.NumGauss(), gmm.Dim(), kGmmAll);
est_atonce.SetZero(kGmmAll);
est_compwise.Resize(gmm.NumGauss(),
gmm.Dim(), kGmmAll);
est_compwise.SetZero(kGmmAll);
// accumulate estimators
for (int32 i = 0; i < feats.NumRows(); i++) {
est_atonce.AccumulateFromDiag(gmm, feats.Row(i), 1.0F);
Vector<BaseFloat> post(gmm.NumGauss());
gmm.ComponentPosteriors(feats.Row(i), &post);
for (int32 m = 0; m < gmm.NumGauss(); m++) {
est_compwise.AccumulateForComponent(feats.Row(i), m, post(m));
}
}
DiagGmm gmm_atonce; // model with all components accumulated together
DiagGmm gmm_compwise; // model with each component accumulated separately
gmm_atonce.Resize(gmm.NumGauss(), gmm.Dim());
gmm_compwise.Resize(gmm.NumGauss(), gmm.Dim());
MleDiagGmmUpdate(config, est_atonce, kGmmAll, &gmm_atonce, NULL, NULL);
MleDiagGmmUpdate(config, est_compwise, kGmmAll, &gmm_compwise, NULL, NULL);
// the two ways of updating should result in the same model
double loglike0 = 0.0;
double loglike1 = 0.0;
double loglike2 = 0.0;
for (int32 i = 0; i < feats.NumRows(); i++) {
loglike0 += static_cast<double>(gmm.LogLikelihood(feats.Row(i)));
loglike1 += static_cast<double>(gmm_atonce.LogLikelihood(feats.Row(i)));
loglike2 += static_cast<double>(gmm_compwise.LogLikelihood(feats.Row(i)));
}
std::cout << "Per-frame log-likelihood before update = "
<< (loglike0/feats.NumRows()) << '\n';
std::cout << "Per-frame log-likelihood (accumulating at once) = "
<< (loglike1/feats.NumRows()) << '\n';
std::cout << "Per-frame log-likelihood (accumulating component-wise) = "
<< (loglike2/feats.NumRows()) << '\n';
AssertEqual(loglike1, loglike2, 1.0e-6);
if (est_atonce.NumGauss() != gmm.NumGauss()) {
KALDI_WARN << "Unable to pass test_update_flags() test because of "
"component removal during Update() call (this is normal)";
return;
} else {
KALDI_ASSERT(loglike1 >= loglike0 - (std::abs(loglike1)+std::abs(loglike0))*1.0e-06);
KALDI_ASSERT(loglike2 >= loglike0 - (std::abs(loglike2)+std::abs(loglike0))*1.0e-06);
}
}
void test_flags_driven_update(const DiagGmm &gmm,
const Matrix<BaseFloat> &feats,
GmmFlagsType flags) {
MleDiagGmmOptions config;
AccumDiagGmm est_gmm_allp; // updates all params
// let's trust that all-params update works
AccumDiagGmm est_gmm_somep; // updates params indicated by flags
// warm-up estimators
est_gmm_allp.Resize(gmm.NumGauss(),
gmm.Dim(), kGmmAll);
est_gmm_allp.SetZero(kGmmAll);
est_gmm_somep.Resize(gmm.NumGauss(),
gmm.Dim(), flags);
est_gmm_somep.SetZero(flags);
// accumulate estimators
for (int32 i = 0; i < feats.NumRows(); i++) {
est_gmm_allp.AccumulateFromDiag(gmm, feats.Row(i), 1.0F);
est_gmm_somep.AccumulateFromDiag(gmm, feats.Row(i), 1.0F);
}
DiagGmm gmm_all_update; // model with all params updated
DiagGmm gmm_some_update; // model with some params updated
gmm_all_update.CopyFromDiagGmm(gmm); // init with orig. model
gmm_some_update.CopyFromDiagGmm(gmm); // init with orig. model
MleDiagGmmUpdate(config, est_gmm_allp, kGmmAll, &gmm_all_update, NULL, NULL);
MleDiagGmmUpdate(config, est_gmm_somep, flags, &gmm_some_update, NULL, NULL);
if (est_gmm_allp.NumGauss() != gmm.NumGauss()) {
KALDI_WARN << "Unable to pass test_update_flags() test because of "
"component removal during Update() call (this is normal)";
return;
}
// now back-off the gmm_all_update params that were not updated
// in gmm_some_update to orig.
if (~flags & kGmmWeights)
gmm_all_update.SetWeights(gmm.weights());
if (~flags & kGmmMeans) {
Matrix<BaseFloat> means(gmm.NumGauss(), gmm.Dim());
gmm.GetMeans(&means);
gmm_all_update.SetMeans(means);
}
if (~flags & kGmmVariances) {
Matrix<BaseFloat> vars(gmm.NumGauss(), gmm.Dim());
gmm.GetVars(&vars);
vars.InvertElements();
gmm_all_update.SetInvVars(vars);
}
gmm_all_update.ComputeGconsts();
// now both models gmm_all_update, gmm_all_update have the same params updated
// compute loglike for models for check
double loglike0 = 0.0;
double loglike1 = 0.0;
double loglike2 = 0.0;
for (int32 i = 0; i < feats.NumRows(); i++) {
loglike0 += static_cast<double>(
gmm.LogLikelihood(feats.Row(i)));
loglike1 += static_cast<double>(
gmm_all_update.LogLikelihood(feats.Row(i)));
loglike2 += static_cast<double>(
gmm_some_update.LogLikelihood(feats.Row(i)));
}
if ((flags & kGmmVariances) && !(flags & kGmmMeans))
return; // Don't run the test as the variance update gives a different
// answer if you don't update the mean.
AssertEqual(loglike1, loglike2, 1.0e-6);
}
void
test_io(const DiagGmm &gmm, const AccumDiagGmm &est_gmm, bool binary,
const Matrix<BaseFloat> &feats) {
std::cout << "Testing I/O, binary = " << binary << '\n';
est_gmm.Write(Output("tmp_stats", binary).Stream(), binary);
bool binary_in;
AccumDiagGmm est_gmm2;
est_gmm2.Resize(est_gmm.NumGauss(),
est_gmm.Dim(), kGmmAll);
Input ki("tmp_stats", &binary_in);
est_gmm2.Read(ki.Stream(), binary_in, false); // not adding
Input ki2("tmp_stats", &binary_in);
est_gmm2.Read(ki2.Stream(), binary_in, true); // adding
est_gmm2.Scale(0.5, kGmmAll);
// 0.5 -> make it same as what it would have been if we read just once.
// [may affect it due to removal of components with small counts].
MleDiagGmmOptions config;
DiagGmm gmm1;
DiagGmm gmm2;
gmm1.CopyFromDiagGmm(gmm);
gmm2.CopyFromDiagGmm(gmm);
MleDiagGmmUpdate(config, est_gmm, est_gmm.Flags(), &gmm1, NULL, NULL);
MleDiagGmmUpdate(config, est_gmm2, est_gmm2.Flags(), &gmm2, NULL, NULL);
BaseFloat loglike1 = 0.0;
BaseFloat loglike2 = 0.0;
for (int32 i = 0; i < feats.NumRows(); i++) {
loglike1 += gmm1.LogLikelihood(feats.Row(i));
loglike2 += gmm2.LogLikelihood(feats.Row(i));
}
AssertEqual(loglike1, loglike2, 1.0e-6);
unlink("tmp_stats");
}
void
UnitTestEstimateDiagGmm() {
size_t dim = 15; // dimension of the gmm
size_t nMix = 9; // number of mixtures in the data
size_t maxiterations = 20; // number of iterations for estimation
// maximum number of densities in the GMM
// larger than the number of mixtures in the data
// so that we can test the removal of unseen components
int32 maxcomponents = 10;
// generate random feature vectors
Matrix<BaseFloat> means_f(nMix, dim), vars_f(nMix, dim);
// first, generate random mean and variance vectors
for (size_t m = 0; m < nMix; m++) {
for (size_t d= 0; d < dim; d++) {
means_f(m, d) = kaldi::RandGauss()*100.0F;
vars_f(m, d) = Exp(kaldi::RandGauss())*1000.0F+ 1.0F;
}
// std::cout << "Gauss " << m << ": Mean = " << means_f.Row(m) << '\n'
// << "Vars = " << vars_f.Row(m) << '\n';
}
// second, generate 1000 feature vectors for each of the mixture components
size_t counter = 0, multiple = 200;
Matrix<BaseFloat> feats(nMix*multiple, dim);
for (size_t m = 0; m < nMix; m++) {
for (size_t i = 0; i < multiple; i++) {
for (size_t d = 0; d < dim; d++) {
feats(counter, d) = means_f(m, d) + kaldi::RandGauss() *
std::sqrt(vars_f(m, d));
}
counter++;
}
}
// Compute the global mean and variance
Vector<BaseFloat> mean_acc(dim);
Vector<BaseFloat> var_acc(dim);
Vector<BaseFloat> featvec(dim);
for (size_t i = 0; i < counter; i++) {
featvec.CopyRowFromMat(feats, i);
mean_acc.AddVec(1.0, featvec);
featvec.ApplyPow(2.0);
var_acc.AddVec(1.0, featvec);
}
mean_acc.Scale(1.0F/counter);
var_acc.Scale(1.0F/counter);
var_acc.AddVec2(-1.0, mean_acc);
// std::cout << "Mean acc = " << mean_acc << '\n' << "Var acc = "
// << var_acc << '\n';
// write the feature vectors to a file
// std::ofstream of("tmpfeats");
// of.precision(10);
// of << feats;
// of.close();
// now generate randomly initial values for the GMM
Vector<BaseFloat> weights(1);
Matrix<BaseFloat> means(1, dim), vars(1, dim), invvars(1, dim);
for (size_t d= 0; d < dim; d++) {
means(0, d) = kaldi::RandGauss()*100.0F;
vars(0, d) = Exp(kaldi::RandGauss()) *10.0F + 1e-5F;
}
weights(0) = 1.0F;
invvars.CopyFromMat(vars);
invvars.InvertElements();
// new GMM
DiagGmm *gmm = new DiagGmm();
gmm->Resize(1, dim);
gmm->SetWeights(weights);
gmm->SetInvVarsAndMeans(invvars, means);
gmm->ComputeGconsts();
{
KALDI_LOG << "Testing natural<>normal conversion";
DiagGmmNormal ngmm(*gmm);
DiagGmm rgmm;
rgmm.Resize(1, dim);
ngmm.CopyToDiagGmm(&rgmm);
// check contents
KALDI_ASSERT(ApproxEqual(weights(0), 1.0F, 1e-6));
KALDI_ASSERT(ApproxEqual(gmm->weights()(0), rgmm.weights()(0), 1e-6));
for (int32 d = 0; d < dim; d++) {
KALDI_ASSERT(ApproxEqual(means.Row(0)(d), ngmm.means_.Row(0)(d), 1e-6));
KALDI_ASSERT(ApproxEqual(1./invvars.Row(0)(d), ngmm.vars_.Row(0)(d), 1e-6));
KALDI_ASSERT(ApproxEqual(gmm->means_invvars().Row(0)(d), rgmm.means_invvars().Row(0)(d), 1e-6));
KALDI_ASSERT(ApproxEqual(gmm->inv_vars().Row(0)(d), rgmm.inv_vars().Row(0)(d), 1e-6));
}
KALDI_LOG << "OK";
}
AccumDiagGmm est_gmm;
// var_acc.Scale(0.1);
// est_gmm.config_.p_variance_floor_vector = &var_acc;
MleDiagGmmOptions config;
config.min_variance = 0.01;
GmmFlagsType flags = kGmmAll; // Should later try reducing this.
est_gmm.Resize(gmm->NumGauss(), gmm->Dim(), flags);
// iterate
size_t iteration = 0;
float lastloglike = 0.0;
int32 lastloglike_nM = 0;
while (iteration < maxiterations) {
Vector<BaseFloat> featvec(dim);
est_gmm.Resize(gmm->NumGauss(), gmm->Dim(), flags);
est_gmm.SetZero(flags);
double loglike = 0.0;
for (size_t i = 0; i < counter; i++) {
featvec.CopyRowFromMat(feats, i);
loglike += static_cast<double>(est_gmm.AccumulateFromDiag(*gmm,
featvec, 1.0F));
}
std::cout << "Loglikelihood before iteration " << iteration << " : "
<< std::scientific << loglike << " number of components: "
<< gmm->NumGauss() << '\n';
// every 5th iteration check loglike change and update lastloglike
if (iteration % 5 == 0) {
// likelihood should be increasing on the long term
if ((iteration > 0) && (gmm->NumGauss() >= lastloglike_nM)) {
KALDI_ASSERT(loglike - lastloglike >= -1.0);
}
lastloglike = loglike;
lastloglike_nM = gmm->NumGauss();
}
// binary write
est_gmm.Write(Output("tmp_stats", true).Stream(), true);
// binary read
bool binary_in;
Input ki("tmp_stats", &binary_in);
est_gmm.Read(ki.Stream(), binary_in, false); // false = not adding.
BaseFloat obj, count;
MleDiagGmmUpdate(config, est_gmm, flags, gmm, &obj, &count);
KALDI_LOG <<"ML objective function change = " << (obj/count)
<< " per frame, over " << (count) << " frames.";
if ((iteration % 3 == 1) && (gmm->NumGauss() * 2 <= maxcomponents)) {
gmm->Split(gmm->NumGauss() * 2, 0.001);
}
if (iteration == 5) { // run following tests with not too overfitted model
std::cout << "Testing flags-driven updates" << '\n';
test_flags_driven_update(*gmm, feats, kGmmAll);
test_flags_driven_update(*gmm, feats, kGmmWeights);
test_flags_driven_update(*gmm, feats, kGmmMeans);
test_flags_driven_update(*gmm, feats, kGmmVariances);
test_flags_driven_update(*gmm, feats, kGmmWeights | kGmmMeans);
std::cout << "Testing component-wise accumulation" << '\n';
TestComponentAcc(*gmm, feats);
}
iteration++;
}
{ // I/O tests
GmmFlagsType flags_all = kGmmAll;
est_gmm.Resize(gmm->NumGauss(),
gmm->Dim(), flags_all);
est_gmm.SetZero(flags_all);
float loglike = 0.0;
for (size_t i = 0; i < counter; i++) {
loglike += est_gmm.AccumulateFromDiag(*gmm, feats.Row(i), 1.0F);
}
test_io(*gmm, est_gmm, false, feats); // ASCII mode
test_io(*gmm, est_gmm, true, feats); // Binary mode
}
{ // Test multi-threaded update.
GmmFlagsType flags_all = kGmmAll;
est_gmm.Resize(gmm->NumGauss(),
gmm->Dim(), flags_all);
est_gmm.SetZero(flags_all);
Vector<BaseFloat> weights(counter);
for (size_t i = 0; i < counter; i++)
weights(i) = 0.5 + 0.1 * (Rand() % 10);
float loglike = 0.0;
for (size_t i = 0; i < counter; i++) {
loglike += weights(i) *
est_gmm.AccumulateFromDiag(*gmm, feats.Row(i), weights(i));
}
AccumDiagGmm est_gmm2(*gmm, flags_all);
int32 num_threads = 2;
float loglike2 =
est_gmm2.AccumulateFromDiagMultiThreaded(*gmm, feats, weights, num_threads);
AssertEqual(loglike, loglike2);
est_gmm.AssertEqual(est_gmm2);
}
delete gmm;
unlink("tmp_stats");
}
int main() {
// repeat the test five times
for (int i = 0; i < 2; i++)
UnitTestEstimateDiagGmm();
std::cout << "Test OK.\n";
}