nnet-chain-example.cc
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// nnet3/nnet-chain-example.cc
// Copyright 2015 Johns Hopkins University (author: Daniel Povey)
// See ../../COPYING for clarification regarding multiple authors
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// THIS CODE IS PROVIDED *AS IS* BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
// KIND, EITHER EXPRESS OR IMPLIED, INCLUDING WITHOUT LIMITATION ANY IMPLIED
// WARRANTIES OR CONDITIONS OF TITLE, FITNESS FOR A PARTICULAR PURPOSE,
// MERCHANTABLITY OR NON-INFRINGEMENT.
// See the Apache 2 License for the specific language governing permissions and
// limitations under the License.
#include <cmath>
#include "nnet3/nnet-chain-example.h"
#include "nnet3/nnet-example-utils.h"
namespace kaldi {
namespace nnet3 {
void NnetChainSupervision::Write(std::ostream &os, bool binary) const {
CheckDim();
WriteToken(os, binary, "<NnetChainSup>");
WriteToken(os, binary, name);
WriteIndexVector(os, binary, indexes);
supervision.Write(os, binary);
WriteToken(os, binary, "<DW2>");
deriv_weights.Write(os, binary);
WriteToken(os, binary, "</NnetChainSup>");
}
bool NnetChainSupervision::operator == (const NnetChainSupervision &other) const {
return name == other.name && indexes == other.indexes &&
supervision == other.supervision &&
deriv_weights.ApproxEqual(other.deriv_weights);
}
void NnetChainSupervision::Read(std::istream &is, bool binary) {
ExpectToken(is, binary, "<NnetChainSup>");
ReadToken(is, binary, &name);
ReadIndexVector(is, binary, &indexes);
supervision.Read(is, binary);
std::string token;
ReadToken(is, binary, &token);
// in the future this back-compatibility code can be reworked.
if (token != "</NnetChainSup>") {
KALDI_ASSERT(token == "<DW>" || token == "<DW2>");
if (token == "<DW>")
ReadVectorAsChar(is, binary, &deriv_weights);
else
deriv_weights.Read(is, binary);
ExpectToken(is, binary, "</NnetChainSup>");
}
CheckDim();
}
void NnetChainSupervision::CheckDim() const {
if (supervision.frames_per_sequence == -1) {
// this object has not been set up.
KALDI_ASSERT(indexes.empty());
return;
}
KALDI_ASSERT(indexes.size() == supervision.num_sequences *
supervision.frames_per_sequence && !indexes.empty() &&
supervision.frames_per_sequence > 1);
int32 first_frame = indexes[0].t,
frame_skip = indexes[supervision.num_sequences].t - first_frame,
num_sequences = supervision.num_sequences,
frames_per_sequence = supervision.frames_per_sequence;
int32 k = 0;
for (int32 i = 0; i < frames_per_sequence; i++) {
for (int32 j = 0; j < num_sequences; j++,k++) {
int32 n = j, t = i * frame_skip + first_frame, x = 0;
Index index(n, t, x);
KALDI_ASSERT(indexes[k] == index);
}
}
if (deriv_weights.Dim() != 0) {
KALDI_ASSERT(deriv_weights.Dim() == indexes.size());
KALDI_ASSERT(deriv_weights.Min() >= 0.0);
}
}
NnetChainSupervision::NnetChainSupervision(const NnetChainSupervision &other):
name(other.name),
indexes(other.indexes),
supervision(other.supervision),
deriv_weights(other.deriv_weights) { CheckDim(); }
void NnetChainSupervision::Swap(NnetChainSupervision *other) {
name.swap(other->name);
indexes.swap(other->indexes);
supervision.Swap(&(other->supervision));
deriv_weights.Swap(&(other->deriv_weights));
if (RandInt(0, 5) == 0)
CheckDim();
}
NnetChainSupervision::NnetChainSupervision(
const std::string &name,
const chain::Supervision &supervision,
const VectorBase<BaseFloat> &deriv_weights,
int32 first_frame,
int32 frame_skip):
name(name),
supervision(supervision),
deriv_weights(deriv_weights) {
// note: this will set the 'x' index to zero.
indexes.resize(supervision.num_sequences *
supervision.frames_per_sequence);
int32 k = 0, num_sequences = supervision.num_sequences,
frames_per_sequence = supervision.frames_per_sequence;
for (int32 i = 0; i < frames_per_sequence; i++) {
for (int32 j = 0; j < num_sequences; j++,k++) {
indexes[k].n = j;
indexes[k].t = i * frame_skip + first_frame;
}
}
KALDI_ASSERT(k == indexes.size());
CheckDim();
}
void NnetChainExample::Write(std::ostream &os, bool binary) const {
// Note: weight, label, input_frames and spk_info are members. This is a
// struct.
WriteToken(os, binary, "<Nnet3ChainEg>");
WriteToken(os, binary, "<NumInputs>");
int32 size = inputs.size();
WriteBasicType(os, binary, size);
KALDI_ASSERT(size > 0 && "Attempting to write NnetChainExample with no inputs");
if (!binary) os << '\n';
for (int32 i = 0; i < size; i++) {
inputs[i].Write(os, binary);
if (!binary) os << '\n';
}
WriteToken(os, binary, "<NumOutputs>");
size = outputs.size();
WriteBasicType(os, binary, size);
KALDI_ASSERT(size > 0 && "Attempting to write NnetChainExample with no outputs");
if (!binary) os << '\n';
for (int32 i = 0; i < size; i++) {
outputs[i].Write(os, binary);
if (!binary) os << '\n';
}
WriteToken(os, binary, "</Nnet3ChainEg>");
}
void NnetChainExample::Read(std::istream &is, bool binary) {
ExpectToken(is, binary, "<Nnet3ChainEg>");
ExpectToken(is, binary, "<NumInputs>");
int32 size;
ReadBasicType(is, binary, &size);
if (size < 1 || size > 1000000)
KALDI_ERR << "Invalid size " << size;
inputs.resize(size);
for (int32 i = 0; i < size; i++)
inputs[i].Read(is, binary);
ExpectToken(is, binary, "<NumOutputs>");
ReadBasicType(is, binary, &size);
if (size < 1 || size > 1000000)
KALDI_ERR << "Invalid size " << size;
outputs.resize(size);
for (int32 i = 0; i < size; i++)
outputs[i].Read(is, binary);
ExpectToken(is, binary, "</Nnet3ChainEg>");
}
void NnetChainExample::Swap(NnetChainExample *other) {
inputs.swap(other->inputs);
outputs.swap(other->outputs);
}
void NnetChainExample::Compress() {
std::vector<NnetIo>::iterator iter = inputs.begin(), end = inputs.end();
// calling features.Compress() will do nothing if they are sparse or already
// compressed.
for (; iter != end; ++iter) iter->features.Compress();
}
NnetChainExample::NnetChainExample(const NnetChainExample &other):
inputs(other.inputs), outputs(other.outputs) { }
// called from MergeChainExamplesInternal, this function merges the Supervision
// objects into one. Requires (and checks) that they all have the same name.
static void MergeSupervision(
const std::vector<const NnetChainSupervision*> &inputs,
NnetChainSupervision *output) {
int32 num_inputs = inputs.size(),
num_indexes = 0;
for (int32 n = 0; n < num_inputs; n++) {
KALDI_ASSERT(inputs[n]->name == inputs[0]->name);
num_indexes += inputs[n]->indexes.size();
}
output->name = inputs[0]->name;
std::vector<const chain::Supervision*> input_supervision;
input_supervision.reserve(inputs.size());
for (int32 n = 0; n < num_inputs; n++)
input_supervision.push_back(&(inputs[n]->supervision));
chain::Supervision output_supervision;
MergeSupervision(input_supervision,
&output_supervision);
output->supervision.Swap(&output_supervision);
output->indexes.clear();
output->indexes.reserve(num_indexes);
for (int32 n = 0; n < num_inputs; n++) {
const std::vector<Index> &src_indexes = inputs[n]->indexes;
int32 cur_size = output->indexes.size();
output->indexes.insert(output->indexes.end(),
src_indexes.begin(), src_indexes.end());
std::vector<Index>::iterator iter = output->indexes.begin() + cur_size,
end = output->indexes.end();
// change the 'n' index to correspond to the index into 'input'.
// Each example gets a different 'n' value, starting from 0.
for (; iter != end; ++iter) {
KALDI_ASSERT(iter->n == 0 && "Merging already-merged chain egs");
iter->n = n;
}
}
KALDI_ASSERT(output->indexes.size() == num_indexes);
// OK, at this point the 'indexes' will be in the wrong order,
// because they should be first sorted by 't' and next by 'n'.
// 'sort' will fix this, due to the operator < on type Index.
std::sort(output->indexes.begin(), output->indexes.end());
// merge the deriv_weights.
if (inputs[0]->deriv_weights.Dim() != 0) {
int32 frames_per_sequence = inputs[0]->deriv_weights.Dim();
output->deriv_weights.Resize(output->indexes.size(), kUndefined);
KALDI_ASSERT(output->deriv_weights.Dim() ==
frames_per_sequence * num_inputs);
for (int32 n = 0; n < num_inputs; n++) {
const Vector<BaseFloat> &src_deriv_weights = inputs[n]->deriv_weights;
KALDI_ASSERT(src_deriv_weights.Dim() == frames_per_sequence);
// the ordering of the deriv_weights corresponds to the ordering of the
// Indexes, where the time dimension has the greater stride.
for (int32 t = 0; t < frames_per_sequence; t++) {
output->deriv_weights(t * num_inputs + n) = src_deriv_weights(t);
}
}
}
output->CheckDim();
}
void MergeChainExamples(bool compress,
std::vector<NnetChainExample> *input,
NnetChainExample *output) {
int32 num_examples = input->size();
KALDI_ASSERT(num_examples > 0);
// we temporarily make the input-features in 'input' look like regular NnetExamples,
// so that we can recycle the MergeExamples() function.
std::vector<NnetExample> eg_inputs(num_examples);
for (int32 i = 0; i < num_examples; i++)
eg_inputs[i].io.swap((*input)[i].inputs);
NnetExample eg_output;
MergeExamples(eg_inputs, compress, &eg_output);
// swap the inputs back so that they are not really changed.
for (int32 i = 0; i < num_examples; i++)
eg_inputs[i].io.swap((*input)[i].inputs);
// write to 'output->inputs'
eg_output.io.swap(output->inputs);
// Now deal with the chain-supervision 'outputs'. There will
// normally be just one of these, with name "output", but we
// handle the more general case.
int32 num_output_names = (*input)[0].outputs.size();
output->outputs.resize(num_output_names);
for (int32 i = 0; i < num_output_names; i++) {
std::vector<const NnetChainSupervision*> to_merge(num_examples);
for (int32 j = 0; j < num_examples; j++) {
KALDI_ASSERT((*input)[j].outputs.size() == num_output_names);
to_merge[j] = &((*input)[j].outputs[i]);
}
MergeSupervision(to_merge,
&(output->outputs[i]));
}
}
void GetChainComputationRequest(const Nnet &nnet,
const NnetChainExample &eg,
bool need_model_derivative,
bool store_component_stats,
bool use_xent_regularization,
bool use_xent_derivative,
ComputationRequest *request) {
request->inputs.clear();
request->inputs.reserve(eg.inputs.size());
request->outputs.clear();
request->outputs.reserve(eg.outputs.size() * 2);
request->need_model_derivative = need_model_derivative;
request->store_component_stats = store_component_stats;
for (size_t i = 0; i < eg.inputs.size(); i++) {
const NnetIo &io = eg.inputs[i];
const std::string &name = io.name;
int32 node_index = nnet.GetNodeIndex(name);
if (node_index == -1 ||
!nnet.IsInputNode(node_index))
KALDI_ERR << "Nnet example has input named '" << name
<< "', but no such input node is in the network.";
request->inputs.resize(request->inputs.size() + 1);
IoSpecification &io_spec = request->inputs.back();
io_spec.name = name;
io_spec.indexes = io.indexes;
io_spec.has_deriv = false;
}
for (size_t i = 0; i < eg.outputs.size(); i++) {
// there will normally be exactly one output , named "output"
const NnetChainSupervision &sup = eg.outputs[i];
const std::string &name = sup.name;
int32 node_index = nnet.GetNodeIndex(name);
if (node_index == -1 &&
!nnet.IsOutputNode(node_index))
KALDI_ERR << "Nnet example has output named '" << name
<< "', but no such output node is in the network.";
request->outputs.resize(request->outputs.size() + 1);
IoSpecification &io_spec = request->outputs.back();
io_spec.name = name;
io_spec.indexes = sup.indexes;
io_spec.has_deriv = need_model_derivative;
if (use_xent_regularization) {
size_t cur_size = request->outputs.size();
request->outputs.resize(cur_size + 1);
IoSpecification &io_spec = request->outputs[cur_size - 1],
&io_spec_xent = request->outputs[cur_size];
// the IoSpecification for the -xent output is the same
// as for the regular output, except for its name which has
// the -xent suffix (and the has_deriv member may differ).
io_spec_xent = io_spec;
io_spec_xent.name = name + "-xent";
io_spec_xent.has_deriv = use_xent_derivative;
}
}
// check to see if something went wrong.
if (request->inputs.empty())
KALDI_ERR << "No inputs in computation request.";
if (request->outputs.empty())
KALDI_ERR << "No outputs in computation request.";
}
void ShiftChainExampleTimes(int32 frame_shift,
const std::vector<std::string> &exclude_names,
NnetChainExample *eg) {
std::vector<NnetIo>::iterator input_iter = eg->inputs.begin(),
input_end = eg->inputs.end();
for (; input_iter != input_end; ++input_iter) {
bool must_exclude = false;
std::vector<string>::const_iterator exclude_iter = exclude_names.begin(),
exclude_end = exclude_names.end();
for (; exclude_iter != exclude_end; ++exclude_iter)
if (input_iter->name == *exclude_iter)
must_exclude = true;
if (!must_exclude) {
std::vector<Index>::iterator indexes_iter = input_iter->indexes.begin(),
indexes_end = input_iter->indexes.end();
for (; indexes_iter != indexes_end; ++indexes_iter)
indexes_iter->t += frame_shift;
}
}
// note: we'll normally choose a small enough shift that the output-data
// shift will be zero after dividing by frame_subsampling_factor
// (e.g. frame_subsampling_factor == 3 and shift = 0 or 1.
std::vector<NnetChainSupervision>::iterator
sup_iter = eg->outputs.begin(),
sup_end = eg->outputs.end();
for (; sup_iter != sup_end; ++sup_iter) {
std::vector<Index> &indexes = sup_iter->indexes;
KALDI_ASSERT(indexes.size() >= 2 && indexes[0].n == indexes[1].n &&
indexes[0].x == indexes[1].x);
int32 frame_subsampling_factor = indexes[1].t - indexes[0].t;
KALDI_ASSERT(frame_subsampling_factor > 0);
// We need to shift by a multiple of frame_subsampling_factor.
// Round to the closest multiple.
int32 supervision_frame_shift =
frame_subsampling_factor *
std::floor(0.5 + (frame_shift * 1.0 / frame_subsampling_factor));
if (supervision_frame_shift == 0)
continue;
std::vector<Index>::iterator indexes_iter = indexes.begin(),
indexes_end = indexes.end();
for (; indexes_iter != indexes_end; ++indexes_iter)
indexes_iter->t += supervision_frame_shift;
}
}
size_t NnetChainExampleStructureHasher::operator () (
const NnetChainExample &eg) const noexcept {
// these numbers were chosen at random from a list of primes.
NnetIoStructureHasher io_hasher;
size_t size = eg.inputs.size(), ans = size * 35099;
for (size_t i = 0; i < size; i++)
ans = ans * 19157 + io_hasher(eg.inputs[i]);
for (size_t i = 0; i < eg.outputs.size(); i++) {
const NnetChainSupervision &sup = eg.outputs[i];
StringHasher string_hasher;
IndexVectorHasher indexes_hasher;
ans = ans * 17957 +
string_hasher(sup.name) + indexes_hasher(sup.indexes);
}
return ans;
}
bool NnetChainExampleStructureCompare::operator () (
const NnetChainExample &a,
const NnetChainExample &b) const {
NnetIoStructureCompare io_compare;
if (a.inputs.size() != b.inputs.size() ||
a.outputs.size() != b.outputs.size())
return false;
size_t size = a.inputs.size();
for (size_t i = 0; i < size; i++)
if (!io_compare(a.inputs[i], b.inputs[i]))
return false;
size = a.outputs.size();
for (size_t i = 0; i < size; i++)
if (a.outputs[i].name != b.outputs[i].name ||
a.outputs[i].indexes != b.outputs[i].indexes)
return false;
return true;
}
int32 GetNnetChainExampleSize(const NnetChainExample &a) {
int32 ans = 0;
for (size_t i = 0; i < a.inputs.size(); i++) {
int32 s = a.inputs[i].indexes.size();
if (s > ans)
ans = s;
}
for (size_t i = 0; i < a.outputs.size(); i++) {
int32 s = a.outputs[i].indexes.size();
if (s > ans)
ans = s;
}
return ans;
}
ChainExampleMerger::ChainExampleMerger(const ExampleMergingConfig &config,
NnetChainExampleWriter *writer):
finished_(false), num_egs_written_(0),
config_(config), writer_(writer) { }
void ChainExampleMerger::AcceptExample(NnetChainExample *eg) {
KALDI_ASSERT(!finished_);
// If an eg with the same structure as 'eg' is already a key in the
// map, it won't be replaced, but if it's new it will be made
// the key. Also we remove the key before making the vector empty.
// This way we ensure that the eg in the key is always the first
// element of the vector.
std::vector<NnetChainExample*> &vec = eg_to_egs_[eg];
vec.push_back(eg);
int32 eg_size = GetNnetChainExampleSize(*eg),
num_available = vec.size();
bool input_ended = false;
int32 minibatch_size = config_.MinibatchSize(eg_size, num_available,
input_ended);
if (minibatch_size != 0) { // we need to write out a merged eg.
KALDI_ASSERT(minibatch_size == num_available);
std::vector<NnetChainExample*> vec_copy(vec);
eg_to_egs_.erase(eg);
// MergeChainExamples() expects a vector of NnetChainExample, not of pointers,
// so use swap to create that without doing any real work.
std::vector<NnetChainExample> egs_to_merge(minibatch_size);
for (int32 i = 0; i < minibatch_size; i++) {
egs_to_merge[i].Swap(vec_copy[i]);
delete vec_copy[i]; // we owned those pointers.
}
WriteMinibatch(&egs_to_merge);
}
}
void ChainExampleMerger::WriteMinibatch(
std::vector<NnetChainExample> *egs) {
KALDI_ASSERT(!egs->empty());
int32 eg_size = GetNnetChainExampleSize((*egs)[0]);
NnetChainExampleStructureHasher eg_hasher;
size_t structure_hash = eg_hasher((*egs)[0]);
int32 minibatch_size = egs->size();
stats_.WroteExample(eg_size, structure_hash, minibatch_size);
NnetChainExample merged_eg;
MergeChainExamples(config_.compress, egs, &merged_eg);
std::ostringstream key;
key << "merged-" << (num_egs_written_++) << "-" << minibatch_size;
writer_->Write(key.str(), merged_eg);
}
void ChainExampleMerger::Finish() {
if (finished_) return; // already finished.
finished_ = true;
// we'll convert the map eg_to_egs_ to a vector of vectors to avoid
// iterator invalidation problems.
std::vector<std::vector<NnetChainExample*> > all_egs;
all_egs.reserve(eg_to_egs_.size());
MapType::iterator iter = eg_to_egs_.begin(), end = eg_to_egs_.end();
for (; iter != end; ++iter)
all_egs.push_back(iter->second);
eg_to_egs_.clear();
for (size_t i = 0; i < all_egs.size(); i++) {
int32 minibatch_size;
std::vector<NnetChainExample*> &vec = all_egs[i];
KALDI_ASSERT(!vec.empty());
int32 eg_size = GetNnetChainExampleSize(*(vec[0]));
bool input_ended = true;
while (!vec.empty() &&
(minibatch_size = config_.MinibatchSize(eg_size, vec.size(),
input_ended)) != 0) {
// MergeChainExamples() expects a vector of
// NnetChainExample, not of pointers, so use swap to create that
// without doing any real work.
std::vector<NnetChainExample> egs_to_merge(minibatch_size);
for (int32 i = 0; i < minibatch_size; i++) {
egs_to_merge[i].Swap(vec[i]);
delete vec[i]; // we owned those pointers.
}
vec.erase(vec.begin(), vec.begin() + minibatch_size);
WriteMinibatch(&egs_to_merge);
}
if (!vec.empty()) {
int32 eg_size = GetNnetChainExampleSize(*(vec[0]));
NnetChainExampleStructureHasher eg_hasher;
size_t structure_hash = eg_hasher(*(vec[0]));
int32 num_discarded = vec.size();
stats_.DiscardedExamples(eg_size, structure_hash, num_discarded);
for (int32 i = 0; i < num_discarded; i++)
delete vec[i];
vec.clear();
}
}
stats_.PrintStats();
}
} // namespace nnet3
} // namespace kaldi