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LDA/mlp.py
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# -*- coding: utf-8 -*- import keras import numpy as np #from keras.layers.core import Dense, Dropout, Activation from keras.optimizers import SGD,Adam from keras.models import Sequential from keras.layers import Input, Dense, Dropout from keras.models import Model |
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from keras.callbacks import ModelCheckpoint, EarlyStopping |
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from keras.utils.layer_utils import layer_from_config from itertools import izip_longest |
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import tempfile import shutil |
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import pandas from collections import namedtuple from sklearn.metrics import accuracy_score as perf |
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save_tuple = namedtuple("save_tuple",["pred_train","pred_dev","pred_test"]) |
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def ft_dsae(train,dev,test, y_train=None,y_dev=None,y_test=None, ae_hidden=[20],transfer_hidden=[20], start_weights=None,transfer_weights=None,end_weights=None, input_activation="tanh", output_activation="tanh", init="glorot_uniform", ae_dropouts=[None], transfer_do=[None], sgd="sgd", loss="mse", patience=5, verbose=0, epochs=5, batch_size=8): if not start_weights : start_weights = [ None ] * len(ae_hidden) if not transfer_weights : transfer_weights = [None ] * len(transfer_hidden) if not end_weights : end_weights = [ None ] * len(end_weights) if not transfer_do : transfer_do = [0] * len(transfer_hidden) predict_y = True if y_train is None or y_dev is None or y_test is None : y_train = train y_dev = dev y_test = test predict_y = False param_predict = [ train, dev, test ] if predict_y : param_predict += [ y_train, y_dev ,y_test ] pred_by_level = [] # Contient les prediction par niveaux de transfert layers = [Input(shape=(train.shape[1],))] #for w in transfer_weights: #print "TW",[ [ y.shape for y in x ] for x in w] #print "SW",[ [ y.shape for y in x] for x in start_weights] #print "EW",[ [ y.shape for y in x ] for x in end_weights] for cpt in range(1,len(ae_hidden)): #print ae_hidden,cpt #print cpt, "before" #print "before2", [ [ x.shape for x in y] for y in start_weights[:cpt] ] #print "before3", [ [ x.shape for x in y] for y in transfer_weights[cpt]] #print "before4", [ [ x.shape for x in y] for y in end_weights[cpt:]] sizes = ae_hidden[:cpt] + transfer_hidden + ae_hidden[cpt:] weights = start_weights[:cpt] + transfer_weights[(cpt-1)] + end_weights[cpt:] #print "SIZES", sizes #print "AW",[ [ y.shape for y in x ] for x in weights] #print "WEI", len(weights) , [ len(x) for x in weights ] if len(ae_dropouts) == len(ae_hidden): do = ae_dropouts[:cpt] + transfer_do + ae_dropouts[cpt:] else : do = [ 0 ] * (len(ae_hidden) + len(transfer_hidden)) for w in weights[:-1]: #print "STEP", size layers.append(Dense(w[1].shape[0],activation=input_activation,init=init,weights=w)(layers[-1])) if do : d = do.pop(0) if d > 0 : layers.append(Dropout(d)(layers[-1])) layers.append(Dense(y_train.shape[1],activation=output_activation)(layers[-1])) models = [Model(input=layers[0] , output=x) for x in layers[1:]] models[-1].compile(optimizer=sgd,loss=loss) |
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models[-1].fit(train,y_train,nb_epoch=epochs,batch_size=batch_size,callbacks=[EarlyStopping(monitor='val_loss', patience=patience, verbose=0)],validation_data=(dev,dev),verbose=verbose) |
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predictions = [ [x.predict(y) for y in param_predict ] for x in models ] pred_by_level.append(predictions) return pred_by_level |
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def train_mlp_proj(x_train,y_train,x_dev,y_dev,x_test,y_test,hidden_size,input_activation="relu",hidden_activation="relu",output_activation="softmax",loss="mse",init="glorot_uniform",dropouts=None,sgd=None,epochs=1200,batch_size=16,fit_verbose=1,patience=20,test_verbose=0): #model_tempfile=tempfile.mkstemp() tempfold = tempfile.mkdtemp() model_tempfile= tempfold+"/model.hdf" layers = [Input(shape=(x_train.shape[1],))] for h in hidden_size: print h if dropouts: d = dropouts.pop(0) if d > 0 : ldo = Dropout(d)(layers[-1]) print 'append' layers.append(Dense(h,init=init,activation=input_activation)(ldo)) else : print " append" layers.append(Dense(h,init=init,activation=input_activation)(layers[-1])) if dropouts: d = dropouts.pop(0) if d > 0 : ldo =Dropout(d)(layers[-1]) print "end" layers.append(Dense( y_train.shape[1],activation=output_activation,init=init)(ldo)) else: print "end" layers.append(Dense( y_train.shape[1],activation=output_activation,init=init)(layers[-1])) models = [] for l in layers[1:] : models.append(Model(layers[0] , l)) print "nb models : ", len(models), "h :",hidden_size , "layer", len(layers) if not sgd: sgd = SGD(lr=0.01, decay=0, momentum=0.9) models[-1].compile(loss=loss, optimizer=sgd,metrics=['accuracy']) callbacks = [ModelCheckpoint(model_tempfile, monitor='val_acc', verbose=test_verbose, save_best_only=True, save_weights_only=True, mode='auto'), EarlyStopping(monitor='val_acc', patience=patience, verbose=test_verbose) ] # On pourrai essayer avec la loss aussi print models[-1].summary() hist=models[-1].fit(x_train, y_train, nb_epoch=epochs, batch_size=batch_size,verbose=fit_verbose,validation_data=(x_dev,y_dev),callbacks=callbacks) models[-1].load_weights(model_tempfile, by_name=False) proj = [] for layer,model in enumerate(models): proj.append((model.predict(x_train),model.predict(x_dev),model.predict(x_test))) shutil.rmtree(tempfold) return models[-1].summary(),proj def train_mlp_pred(x_train,y_train,x_dev,y_dev,x_test,y_test,hidden_size,input_activation="relu",hidden_activation="relu",output_activation="softmax",loss="mse",init="glorot_uniform",dropouts=None,sgd=None,epochs=1200,batch_size=16,fit_verbose=1,patience=20,test_verbose=0): #model_tempfile=tempfile.mkstemp() tempfold = tempfile.mkdtemp() model_tempfile= tempfold+"/model.hdf" layers = [Input(shape=(x_train.shape[1],))] for h in hidden_size: if dropouts: d = dropouts.pop(0) if d > 0 : ldo = Dropout(d)(layers[-1]) layers.append(Dense(h,init=init,activation=input_activation)(ldo)) else : layers.append(Dense(h,init=init,activation=input_activation)(layers[-1])) if dropouts: d = dropouts.pop(0) if d > 0 : ldo =Dropout(d)(layers[-1]) layers.append(Dense( y_train.shape[1],activation=output_activation,init=init)(ldo)) else: layers.append(Dense( y_train.shape[1],activation=output_activation,init=init)(layers[-1])) model=Model(layers[0] , layers[-1]) if not sgd: sgd = SGD(lr=0.01, decay=0, momentum=0.9) model.compile(loss=loss, optimizer=sgd,metrics=['accuracy']) callbacks = [ModelCheckpoint(model_tempfile, monitor='val_acc', verbose=test_verbose, save_best_only=True, save_weights_only=True, mode='auto'), EarlyStopping(monitor='val_acc', patience=patience, verbose=test_verbose) ] # On pourrai essayer avec la loss aussi print model.summary() hist=model.fit(x_train, y_train, nb_epoch=epochs, batch_size=batch_size,verbose=fit_verbose,validation_data=(x_dev,y_dev),callbacks=callbacks) model.load_weights(model_tempfile, by_name=False) pred=(model.predict(x_train),model.predict(x_dev),model.predict(x_test)) shutil.rmtree(tempfold) return pred,hist |
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def train_mlp(x_train,y_train,x_dev,y_dev,x_test,y_test,hidden_size,input_activation="relu",hidden_activation="relu",output_activation="softmax",loss="mse",init="glorot_uniform",dropouts=None,sgd=None,epochs=1200,batch_size=16,fit_verbose=1,test_verbose=0,save_pred=False,keep_histo=False): |
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layers = [Input(shape=(x_train.shape[1],))] for h in hidden_size: if dropouts: d = dropouts.pop(0) if d > 0 : layers.append(Dropout(d)(layers[-1])) layers.append(Dense(h,init=init,activation=input_activation)(layers[-1])) #if dropouts: # drop_prob=dropouts.pop(0) # if drop_prob > 0: # model.add(Dropout(drop_prob)) #if dropouts: # drop_prob=dropouts.pop(0) # if drop_prob > 0: # model.add(Dropout(drop_prob)) #if dropouts: # model.add(Dropout(dropouts.pop(0))) if dropouts: d = dropouts.pop(0) if d > 0 : layers.append(Dropout(d)(layers[-1])) |
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print y_train[2:10] |
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layers.append(Dense( y_train.shape[1],activation=output_activation,init=init)(layers[-1])) model = Model(layers[0] , layers[-1]) if not sgd: sgd = SGD(lr=0.01, decay=0, momentum=0.9) model.compile(loss=loss, optimizer=sgd,metrics=['accuracy']) scores_dev=[] scores_test=[] scores_train=[] save=None for i in range(epochs): hist=model.fit(x_train, y_train, nb_epoch=1, batch_size=batch_size,verbose=fit_verbose,validation_data=(x_dev,y_dev)) pred_train=model.predict(x_train) pred_dev=model.predict(x_dev) pred_test=model.predict(x_test) scores_train.append(perf(np.argmax(y_train,axis=1),np.argmax(pred_train,axis=1))) scores_dev.append(perf(np.argmax(y_dev,axis=1),np.argmax(pred_dev,axis=1))) scores_test.append(perf(np.argmax(y_test,axis=1),np.argmax(pred_test,axis=1))) if fit_verbose : print "{} {} {} {}".format(i,scores_train[-1],scores_dev[-1],scores_test[-1]) if save is None or (len(scores_dev)>2 and scores_dev[-1] > scores_dev[-2]): save=save_tuple(pred_train,pred_dev,pred_test) arg_dev = np.argmax(scores_dev) best_dev=scores_dev[arg_dev] best_test=scores_test[arg_dev] max_test=np.max(scores_test) if fit_verbose: print " res : {} {} {}".format(best_dev,best_test,max_test) res=[scores_train,scores_dev,scores_test] if save_pred: res.append(save) if keep_histo: res.append(hist) return res |
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def train_ae(train,dev,test,hidden_sizes,y_train=None,y_dev=None,y_test=None,dropouts=None,input_activation="tanh",output_activation="tanh",loss="mse",sgd=None,epochs=500,batch_size=8,test_verbose=0,verbose=1,patience=20,get_weights=False,set_weights=[],best_mod=False): |
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input_vect = Input(shape=(train.shape[1],)) previous = [input_vect] if dropouts is None: dropouts = [ 0 ] * (len(hidden_sizes) +1) if sgd is None : sgd = SGD(lr=0.01, decay=0, momentum=0.9) did_do = False if dropouts : d = dropouts.pop(0) if d : previous.append(Dropout(d)(previous[-1])) did_do = True for h_layer,weight_layer in izip_longest(hidden_sizes,set_weights,fillvalue=None) : # ,weights=w if weight_layer : w = weight_layer[0] else : w = None #print "ADD SIZE" , h_layer if did_do : p = previous.pop() did_do = False else : p = previous[-1] previous.append(Dense(h_layer,activation=input_activation,weights=w)(previous[-1])) if dropouts: d = dropouts.pop(0) if d : previous.append(Dropout(d)(previous[-1])) did_do = True predict_y = True if y_train is None or y_dev is None or y_test is None : y_train = train y_dev = dev y_test = test predict_y = False previous.append(Dense(y_train.shape[1],activation=output_activation)(previous[-1])) models = [Model(input=previous[0] , output=x) for x in previous[1:]] print "MLP", sgd, loss models[-1].compile(optimizer=sgd,loss=loss) |
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cb = [EarlyStopping(monitor='val_loss', patience=patience, verbose=0)] if best_mod: tempfold = tempfile.mkdtemp() model_tempfile= tempfold+"/model.hdf" cb.append( ModelCheckpoint(model_tempfile, monitor='val_loss', verbose=test_verbose, save_best_only=True, save_weights_only=True, mode='auto') ) models[-1].summary() models[-1].fit(train,y_train,nb_epoch=epochs,batch_size=batch_size,callbacks=cb,validation_data=(dev,dev),verbose=verbose) if best_mod: models[-1].load_weights(model_tempfile) shutil.rmtree(tempfold) |
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param_predict = [ train, dev, test ] if predict_y : param_predict += [ y_train, y_dev ,y_test ] predictions = [ [x.predict(y) for y in param_predict ] for x in models ] if get_weights : weights = [ x.get_weights() for x in models[-1].layers if x.get_weights() ] return ( predictions , weights ) else : return predictions def train_sae(train,dev,test,hidden_sizes,y_train=None,y_dev=None,y_test=None,dropouts=None,input_activation="tanh",output_activation="tanh",loss="mse",sgd=None,epochs=500,batch_size=8,verbose=1,patience=20): weights = [] predictions = [[(train,dev,test),()]] ft_pred = [] past_sizes = [] for size in hidden_sizes : #print "DO size " , size , "FROM" , hidden_sizes res_pred, res_wght = train_ae(predictions[-1][-2][0], predictions[-1][-2][1],predictions[-1][-2][2],[size], dropouts=dropouts, input_activation=input_activation, output_activation=output_activation, loss=loss, sgd=sgd, epochs=epochs, batch_size=batch_size, verbose=verbose, patience=patience,get_weights=True) past_sizes.append(size) weights.append(res_wght) predictions.append(res_pred) #print "FINE TUNE " res_ftpred = train_ae(train,dev,test,past_sizes,y_train=y_train,y_dev=y_dev,y_test=y_test, dropouts=dropouts, input_activation=input_activation, output_activation=output_activation, loss=loss,sgd=sgd,epochs=epochs, batch_size=batch_size,verbose=verbose,patience=patience, set_weights=weights) ft_pred.append(res_ftpred) return ( predictions[1:] , ft_pred) |