mlp.py
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# -*- coding: utf-8 -*-
import keras
import numpy as np
#from keras.layers.core import Dense, Dropout, Activation
from keras.optimizers import SGD,Adam
from keras.models import Sequential
from keras.layers import Input, Dense, Dropout
from keras.models import Model
from keras.callbacks import ModelCheckpoint, EarlyStopping
from keras.utils.layer_utils import layer_from_config
from itertools import izip_longest
import tempfile
import shutil
import pandas
from collections import namedtuple
from sklearn.metrics import accuracy_score as perf
save_tuple = namedtuple("save_tuple",["pred_train","pred_dev","pred_test"])
def ft_dsae(train,dev,test,
y_train=None,y_dev=None,y_test=None,
ae_hidden=[20],transfer_hidden=[20],
start_weights=None,transfer_weights=None,end_weights=None,
input_activation="tanh", output_activation="tanh",
init="glorot_uniform",
ae_dropouts=[None], transfer_do=[None],
sgd="sgd", loss="mse", patience=5, verbose=0, epochs=5, batch_size=8):
if not start_weights :
start_weights = [ None ] * len(ae_hidden)
if not transfer_weights :
transfer_weights = [None ] * len(transfer_hidden)
if not end_weights :
end_weights = [ None ] * len(end_weights)
if not transfer_do :
transfer_do = [0] * len(transfer_hidden)
predict_y = True
if y_train is None or y_dev is None or y_test is None :
y_train = train
y_dev = dev
y_test = test
predict_y = False
param_predict = [ train, dev, test ]
if predict_y :
param_predict += [ y_train, y_dev ,y_test ]
pred_by_level = [] # Contient les prediction par niveaux de transfert
layers = [Input(shape=(train.shape[1],))]
#for w in transfer_weights:
#print "TW",[ [ y.shape for y in x ] for x in w]
#print "SW",[ [ y.shape for y in x] for x in start_weights]
#print "EW",[ [ y.shape for y in x ] for x in end_weights]
for cpt in range(1,len(ae_hidden)):
#print ae_hidden,cpt
#print cpt, "before"
#print "before2", [ [ x.shape for x in y] for y in start_weights[:cpt] ]
#print "before3", [ [ x.shape for x in y] for y in transfer_weights[cpt]]
#print "before4", [ [ x.shape for x in y] for y in end_weights[cpt:]]
sizes = ae_hidden[:cpt] + transfer_hidden + ae_hidden[cpt:]
weights = start_weights[:cpt] + transfer_weights[(cpt-1)] + end_weights[cpt:]
#print "SIZES", sizes
#print "AW",[ [ y.shape for y in x ] for x in weights]
#print "WEI", len(weights) , [ len(x) for x in weights ]
if len(ae_dropouts) == len(ae_hidden):
do = ae_dropouts[:cpt] + transfer_do + ae_dropouts[cpt:]
else :
do = [ 0 ] * (len(ae_hidden) + len(transfer_hidden))
for w in weights[:-1]:
#print "STEP", size
layers.append(Dense(w[1].shape[0],activation=input_activation,init=init,weights=w)(layers[-1]))
if do :
d = do.pop(0)
if d > 0 :
layers.append(Dropout(d)(layers[-1]))
layers.append(Dense(y_train.shape[1],activation=output_activation)(layers[-1]))
models = [Model(input=layers[0] , output=x) for x in layers[1:]]
models[-1].compile(optimizer=sgd,loss=loss)
models[-1].fit(train,y_train,nb_epoch=epochs,batch_size=batch_size,callbacks=[EarlyStopping(monitor='val_loss', patience=patience, verbose=0)],validation_data=(dev,dev),verbose=verbose)
predictions = [ [x.predict(y) for y in param_predict ] for x in models ]
pred_by_level.append(predictions)
return pred_by_level
def train_mlp_proj(x_train,y_train,x_dev,y_dev,x_test,y_test,hidden_size,input_activation="relu",hidden_activation="relu",output_activation="softmax",loss="mse",init="glorot_uniform",dropouts=None,sgd=None,epochs=1200,batch_size=16,fit_verbose=1,patience=20,test_verbose=0):
#model_tempfile=tempfile.mkstemp()
tempfold = tempfile.mkdtemp()
model_tempfile= tempfold+"/model.hdf"
layers = [Input(shape=(x_train.shape[1],))]
for h in hidden_size:
print h
if dropouts:
d = dropouts.pop(0)
if d > 0 :
ldo = Dropout(d)(layers[-1])
print 'append'
layers.append(Dense(h,init=init,activation=input_activation)(ldo))
else :
print " append"
layers.append(Dense(h,init=init,activation=input_activation)(layers[-1]))
if dropouts:
d = dropouts.pop(0)
if d > 0 :
ldo =Dropout(d)(layers[-1])
print "end"
layers.append(Dense( y_train.shape[1],activation=output_activation,init=init)(ldo))
else:
print "end"
layers.append(Dense( y_train.shape[1],activation=output_activation,init=init)(layers[-1]))
models = []
for l in layers[1:] :
models.append(Model(layers[0] , l))
print "nb models : ", len(models), "h :",hidden_size , "layer", len(layers)
if not sgd:
sgd = SGD(lr=0.01, decay=0, momentum=0.9)
models[-1].compile(loss=loss, optimizer=sgd,metrics=['accuracy'])
callbacks = [ModelCheckpoint(model_tempfile, monitor='val_acc', verbose=test_verbose, save_best_only=True, save_weights_only=True, mode='auto'),
EarlyStopping(monitor='val_acc', patience=patience, verbose=test_verbose) ] # On pourrai essayer avec la loss aussi
print models[-1].summary()
hist=models[-1].fit(x_train, y_train, nb_epoch=epochs, batch_size=batch_size,verbose=fit_verbose,validation_data=(x_dev,y_dev),callbacks=callbacks)
models[-1].load_weights(model_tempfile, by_name=False)
proj = []
for layer,model in enumerate(models):
proj.append((model.predict(x_train),model.predict(x_dev),model.predict(x_test)))
shutil.rmtree(tempfold)
return models[-1].summary(),proj
def train_mlp_pred(x_train,y_train,x_dev,y_dev,x_test,y_test,hidden_size,input_activation="relu",hidden_activation="relu",output_activation="softmax",loss="mse",init="glorot_uniform",dropouts=None,sgd=None,epochs=1200,batch_size=16,fit_verbose=1,patience=20,test_verbose=0):
#model_tempfile=tempfile.mkstemp()
tempfold = tempfile.mkdtemp()
model_tempfile= tempfold+"/model.hdf"
layers = [Input(shape=(x_train.shape[1],))]
for h in hidden_size:
if dropouts:
d = dropouts.pop(0)
if d > 0 :
ldo = Dropout(d)(layers[-1])
layers.append(Dense(h,init=init,activation=input_activation)(ldo))
else :
layers.append(Dense(h,init=init,activation=input_activation)(layers[-1]))
if dropouts:
d = dropouts.pop(0)
if d > 0 :
ldo =Dropout(d)(layers[-1])
layers.append(Dense( y_train.shape[1],activation=output_activation,init=init)(ldo))
else:
layers.append(Dense( y_train.shape[1],activation=output_activation,init=init)(layers[-1]))
model=Model(layers[0] , layers[-1])
if not sgd:
sgd = SGD(lr=0.01, decay=0, momentum=0.9)
model.compile(loss=loss, optimizer=sgd,metrics=['accuracy'])
callbacks = [ModelCheckpoint(model_tempfile, monitor='val_acc', verbose=test_verbose, save_best_only=True, save_weights_only=True, mode='auto'),
EarlyStopping(monitor='val_acc', patience=patience, verbose=test_verbose) ] # On pourrai essayer avec la loss aussi
print model.summary()
hist=model.fit(x_train, y_train, nb_epoch=epochs, batch_size=batch_size,verbose=fit_verbose,validation_data=(x_dev,y_dev),callbacks=callbacks)
model.load_weights(model_tempfile, by_name=False)
pred=(model.predict(x_train),model.predict(x_dev),model.predict(x_test))
shutil.rmtree(tempfold)
return pred,hist
def train_mlp(x_train,y_train,x_dev,y_dev,x_test,y_test,hidden_size,input_activation="relu",hidden_activation="relu",output_activation="softmax",loss="mse",init="glorot_uniform",dropouts=None,sgd=None,epochs=1200,batch_size=16,fit_verbose=1,test_verbose=0,save_pred=False,keep_histo=False):
layers = [Input(shape=(x_train.shape[1],))]
for h in hidden_size:
if dropouts:
d = dropouts.pop(0)
if d > 0 :
layers.append(Dropout(d)(layers[-1]))
layers.append(Dense(h,init=init,activation=input_activation)(layers[-1]))
#if dropouts:
# drop_prob=dropouts.pop(0)
# if drop_prob > 0:
# model.add(Dropout(drop_prob))
#if dropouts:
# drop_prob=dropouts.pop(0)
# if drop_prob > 0:
# model.add(Dropout(drop_prob))
#if dropouts:
# model.add(Dropout(dropouts.pop(0)))
if dropouts:
d = dropouts.pop(0)
if d > 0 :
layers.append(Dropout(d)(layers[-1]))
print y_train[2:10]
layers.append(Dense( y_train.shape[1],activation=output_activation,init=init)(layers[-1]))
model = Model(layers[0] , layers[-1])
if not sgd:
sgd = SGD(lr=0.01, decay=0, momentum=0.9)
model.compile(loss=loss, optimizer=sgd,metrics=['accuracy'])
scores_dev=[]
scores_test=[]
scores_train=[]
save=None
for i in range(epochs):
hist=model.fit(x_train, y_train, nb_epoch=1, batch_size=batch_size,verbose=fit_verbose,validation_data=(x_dev,y_dev))
pred_train=model.predict(x_train)
pred_dev=model.predict(x_dev)
pred_test=model.predict(x_test)
scores_train.append(perf(np.argmax(y_train,axis=1),np.argmax(pred_train,axis=1)))
scores_dev.append(perf(np.argmax(y_dev,axis=1),np.argmax(pred_dev,axis=1)))
scores_test.append(perf(np.argmax(y_test,axis=1),np.argmax(pred_test,axis=1)))
if fit_verbose :
print "{} {} {} {}".format(i,scores_train[-1],scores_dev[-1],scores_test[-1])
if save is None or (len(scores_dev)>2 and scores_dev[-1] > scores_dev[-2]):
save=save_tuple(pred_train,pred_dev,pred_test)
arg_dev = np.argmax(scores_dev)
best_dev=scores_dev[arg_dev]
best_test=scores_test[arg_dev]
max_test=np.max(scores_test)
if fit_verbose:
print " res : {} {} {}".format(best_dev,best_test,max_test)
res=[scores_train,scores_dev,scores_test]
if save_pred:
res.append(save)
if keep_histo:
res.append(hist)
return res
def train_ae(train,dev,test,hidden_sizes,y_train=None,y_dev=None,y_test=None,dropouts=None,input_activation="tanh",output_activation="tanh",loss="mse",sgd=None,epochs=500,batch_size=8,test_verbose=0,verbose=1,patience=20,get_weights=False,set_weights=[],best_mod=False):
input_vect = Input(shape=(train.shape[1],))
previous = [input_vect]
if dropouts is None:
dropouts = [ 0 ] * (len(hidden_sizes) +1)
if sgd is None :
sgd = SGD(lr=0.01, decay=0, momentum=0.9)
did_do = False
if dropouts :
d = dropouts.pop(0)
if d :
previous.append(Dropout(d)(previous[-1]))
did_do = True
for h_layer,weight_layer in izip_longest(hidden_sizes,set_weights,fillvalue=None) :
# ,weights=w
if weight_layer :
w = weight_layer[0]
else :
w = None
#print "ADD SIZE" , h_layer
if did_do :
p = previous.pop()
did_do = False
else :
p = previous[-1]
previous.append(Dense(h_layer,activation=input_activation,weights=w)(previous[-1]))
if dropouts:
d = dropouts.pop(0)
if d :
previous.append(Dropout(d)(previous[-1]))
did_do = True
predict_y = True
if y_train is None or y_dev is None or y_test is None :
y_train = train
y_dev = dev
y_test = test
predict_y = False
previous.append(Dense(y_train.shape[1],activation=output_activation)(previous[-1]))
models = [Model(input=previous[0] , output=x) for x in previous[1:]]
print "MLP", sgd, loss
models[-1].compile(optimizer=sgd,loss=loss)
cb = [EarlyStopping(monitor='val_loss', patience=patience, verbose=0)]
if best_mod:
tempfold = tempfile.mkdtemp()
model_tempfile= tempfold+"/model.hdf"
cb.append( ModelCheckpoint(model_tempfile, monitor='val_loss', verbose=test_verbose, save_best_only=True, save_weights_only=True, mode='auto') )
models[-1].summary()
models[-1].fit(train,y_train,nb_epoch=epochs,batch_size=batch_size,callbacks=cb,validation_data=(dev,dev),verbose=verbose)
if best_mod:
models[-1].load_weights(model_tempfile)
shutil.rmtree(tempfold)
param_predict = [ train, dev, test ]
if predict_y :
param_predict += [ y_train, y_dev ,y_test ]
predictions = [ [x.predict(y) for y in param_predict ] for x in models ]
if get_weights :
weights = [ x.get_weights() for x in models[-1].layers if x.get_weights() ]
return ( predictions , weights )
else :
return predictions
def train_sae(train,dev,test,hidden_sizes,y_train=None,y_dev=None,y_test=None,dropouts=None,input_activation="tanh",output_activation="tanh",loss="mse",sgd=None,epochs=500,batch_size=8,verbose=1,patience=20):
weights = []
predictions = [[(train,dev,test),()]]
ft_pred = []
past_sizes = []
for size in hidden_sizes :
#print "DO size " , size , "FROM" , hidden_sizes
res_pred, res_wght = train_ae(predictions[-1][-2][0], predictions[-1][-2][1],predictions[-1][-2][2],[size],
dropouts=dropouts, input_activation=input_activation,
output_activation=output_activation, loss=loss, sgd=sgd,
epochs=epochs, batch_size=batch_size, verbose=verbose,
patience=patience,get_weights=True)
past_sizes.append(size)
weights.append(res_wght)
predictions.append(res_pred)
#print "FINE TUNE "
res_ftpred = train_ae(train,dev,test,past_sizes,y_train=y_train,y_dev=y_dev,y_test=y_test,
dropouts=dropouts,
input_activation=input_activation,
output_activation=output_activation,
loss=loss,sgd=sgd,epochs=epochs,
batch_size=batch_size,verbose=verbose,patience=patience,
set_weights=weights)
ft_pred.append(res_ftpred)
return ( predictions[1:] , ft_pred)